Acidithiobacillus ferrivorans: Acife_1313
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Entry
Acife_1313 CDS
T01595
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
afi
Acidithiobacillus ferrivorans
Pathway
afi03030
DNA replication
afi03430
Mismatch repair
afi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Acife_1313
03430 Mismatch repair
Acife_1313
03440 Homologous recombination
Acife_1313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afi03032
]
Acife_1313
03400 DNA repair and recombination proteins [BR:
afi03400
]
Acife_1313
Enzymes [BR:
afi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Acife_1313
DNA replication proteins [BR:
afi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Acife_1313
DNA repair and recombination proteins [BR:
afi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Acife_1313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AEM47468
UniProt:
G0JQD7
LinkDB
All DBs
Position
1313550..1317050
Genome browser
AA seq
1166 aa
AA seq
DB search
MSTPRFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARSQ
GIKPLIGSEIWVHDATDLERPAGLILLCMNKTGYGNLSRLLSRAYLEGSRHGRPQIDAVW
LEGASDGLIALSAAGQGEIGRALQRNPQQAESRARYYAKLFPERFYLEVQRNGEAGQEAL
VQATVVLAGKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDPRRPRRFTPEHRLP
DPEEMRGRFADLPEACDNTIEIARRCNMELVLGQYALPDYPIPTGQSADEYLHDAAQKGL
QERLQELHIAGNATLPYHERLLREVGVIQQMGFPGYFLIVADFIQWAKNNGVPVGPGRGS
GAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDFCMDQRDRVIQYVADKYGR
DRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPSDLGMTLARALEESEELRRR
QTEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADRMPLFTDGSEGGGNVTQLDK
DDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAVAGRVPVNIQQLPLDDTATFALLKST
ETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQSGMVDDFIARKHGKAQVTF
LHPDLAPILDETYGVIVYQEQVMQSAQVLAGYSLGSADLLRRAMGKKKPEEMAKQRAIFL
EGAHKNGLVADQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQTAYLKAHYPQFFMAAVLT
ADMDHTDKVVAMLAECTRMGLRIAPPSVQQGVLEFRPEGDGDIRFGLGAIKGLGRAAIQA
ILDARREGPFLNLFDLLCRVDTQKINRRALEALIRAGAMDDWGVSRASLIASVDSCIEAA
AQFQSSRASQQESLFSGQEALPVAPPPVLAEAWSLTETLRQERETLGFYLSGHPMASLRD
ELAALGTVPLGDIRSGTTVLVAGLVVARRSTRTKRGDRIYFLTLDDGRGRLEVVIFAEAW
AQAGKVGEGEEPVLVLGEVGEDSYSGGLRLNALRVLGTARAREELATQLTLELEIAAELA
PQDLLAVLRKYPGQTALRLRLRVGDDIIAQLRVAESLSFAAGPAAIAALTALAPTARWHW
DYRSATLLVNNVVPLERARYGARRPA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccccccgctttgtccatttgcacgtacactctgaatattccttggaggatggc
attattccggtgaaggcgctggccaggcgctgtgcggagcggggcatgccggccgtggcg
atcaccgatcatggcaatctctttgccctggtcaaattctataacgcggcccggagtcag
gggatcaaacccctgattggcagtgaaatctgggtgcatgatgcgacagacttggagcgg
cccgccggtctgatcctgctgtgtatgaataaaaccggctacggtaatctcagccgcttg
ctcagtcgggcttatctggagggcagtcgccacggacgtccacagatcgacgcggtatgg
ctggaaggtgcgagtgacggtctcatcgccctgtctgcggctggccagggggaaatcggt
cgtgccctgcagcgcaatccccagcaggcggaaagccgggcacggtactacgccaagctt
tttcccgagcgtttttatctggaagtgcagcgcaatggcgaggctgggcaggaggcactg
gtacaggccacagtggtgctcgcaggaaaactggatttaccactggtggcgaccaacaat
gcacactttctggatgcggcggactttgccgccttcgatgcgcggcagtgtatttctgcg
ggctttaccctggatgacccgcgccgtccccgccgttttacgccggagcaccgtctgccc
gaccccgaagaaatgcgagggcgttttgcggacctgccggaagcttgcgacaacaccatc
gaaatcgcgcgacgctgcaatatggagttggtgctaggccagtatgcgctcccggactac
cccattcctaccggtcagtccgcagatgaatatttgcatgatgcggcgcaaaaaggtcta
caggaacgtttgcaggaactgcatatcgctggcaacgccacgctgccttaccatgaacgc
ctgttgcgcgaggtcggtgttattcagcagatgggcttccccggttattttctcatcgtc
gcggattttatccagtgggcaaaaaacaatggcgttccggtaggaccgggacgtggctcc
ggtgccggatcgctggtggcctatgcactgcggatcaccgatctcgatcccattggcaat
ggcctgttgttcgagcgctttctcaaccccgagcgcgtttccatgcccgacttcgacgtg
gatttctgcatggatcagcgtgaccgcgtgattcagtatgtggccgacaaatacggtcgc
gatcgggtcggtcagatcattaccttcgggacgatgaaggcgcgggcggtggtacgtgat
gtcggccgggtgctgggtttgccttacggctttgtcgaccagttggctaagttggtgccg
agcgacttgggcatgaccttggccagggccctggaagaatccgaggaactgcgccgccgc
cagaccgaggaagatgacgtccgcgatctgctggatatcgctctgcgtctggagggcttg
ccacgccacgcttcgacccatgcgggcggtgtggtgatctccccggaaccgctggccgac
cgcatgccgctgttcaccgacggctccgaaggcgggggtaatgtcacccaactcgacaaa
gatgatgtggagaagatggggctggtaaagttcgatttcctcgggttgcgtaccctgacc
atcattgatatggcggtcaagctcatcaatgccgatgcggcagtggcggggcgcgtgcca
gtgaatattcagcagttgccgttagacgatacggcgacttttgccttgctcaaatccacc
gagacggcggcggtcttccaactggaatcgtcgggcatgcgcgatctggtgcggcgtctg
cagccggacacctttgaagatattgttgccctcgtcgccctattccgacctgggccgcta
cagtcaggcatggtcgatgacttcatcgcccgtaaacatggcaaagcgcaggtaactttt
ctgcatcccgacctggcgccgattctcgatgaaacctatggggtgattgtttatcaagag
caggtcatgcaatccgcacaggtgctggcgggttattccctcggcagcgctgatttgctg
cggcgggccatgggcaagaaaaaaccggaggaaatggccaagcagcgcgccatcttcctg
gagggtgcccataaaaatggtctggtagcggatcaggccggggcgatcttcgacctcatg
gaaaagtttgccgagtacggtttcaacaaatcgcactcggcagcctatgccctggtgtcc
tatcagaccgcttacctgaaggcgcactatccacaattttttatggcggccgtgctgacc
gccgatatggaccataccgacaaggttgtggcgatgcttgccgagtgtacccgtatgggg
ctacggattgctccgccgagcgttcagcagggggtgctggagttccggccggagggggat
ggtgatatccgctttggcctgggagccattaaaggtttggggcgggcggccattcaggcg
attctcgatgctcgtagagagggacccttcttgaatcttttcgacctgctttgccgggtg
gatacccagaaaatcaatcgtcgtgccctggaagcgttgattcgcgctggcgctatggat
gactggggtgtgtcgcgggccagcctgattgcttccgtggacagttgtattgaagcagcg
gcgcagtttcagagcagtcgggcaagtcagcaggaatcgttgtttagcggacaggaggcg
ttgccggtggcgccaccgccggtgctggcggaagcgtggagcctcaccgaaaccctgcgt
caggaacgggagaccctgggtttttatctcagcggtcatcctatggctagtttgcgggat
gagctggcggcactgggaacggtgcctcttggcgatatccgcagcggcaccacggtgctg
gtggctggcttggtggtagcacggcgcagcacccggaccaagcgcggcgatcggatttat
tttctgaccctggacgacggtcgggggcggctggaggtcgtcatttttgccgaagcctgg
gcgcaggctggtaaagtcggggagggtgaggagccggtgctggttttgggtgaggtgggc
gaggacagctattctggtggcctgcggctcaatgccctgcgcgtgctgggtacggcgcgg
gcgcgtgaggaactggctacgcaactgaccctggagctggaaatcgctgcagaattggct
ccccaagacctgcttgccgtgctccgtaaataccccggccaaacggctttgcgtctgcgt
ttgcgcgtcggtgacgatattatcgcgcaattacgggtggcggagagcctgagcttcgcg
gcgggtcccgccgctatcgctgccttgacggcgctcgcacccaccgcgcgctggcactgg
gactatcggtcggcgacacttctcgtcaataatgtcgtccccctggagcgtgcccgatat
ggggcacgacgcccggcctga
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