Acidithiobacillus ferrivorans: Acife_2666
Help
Entry
Acife_2666 CDS
T01595
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
afi
Acidithiobacillus ferrivorans
Pathway
afi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Acife_2666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afi03400
]
Acife_2666
Enzymes [BR:
afi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Acife_2666
DNA repair and recombination proteins [BR:
afi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Acife_2666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEM48744
UniProt:
G0JR98
LinkDB
All DBs
Position
2656510..2659875
Genome browser
AA seq
1121 aa
AA seq
DB search
MDRSLFLGTPPRAGAARAFSQFYGAADSWLAAQMARQWQRPLLILLPNARDVEEWQREWR
FFAPDLPAPLIFPDREILPYDRLAPPADATATRLATLAALPEWRGVCLAPLSAVLQRLPP
RSFLDQHAFVLAVGDHLSPEGFRQRLIDAGYRNVSEVSEAGELAWRGGIIDLFPSGSTLP
YRIELFDTVVESIRAFDPETQRTLQKVERVSLLPAREVPVDAAALQEFRSRFRARFSGDP
QRAEIYRTASRGQVPQGAEHYLPLFFPQSSHLLMHFAKDGIVFLPPGLETSARHIRQDWQ
ERHEERAHDTAYPILPPDELLLTPGEWEDILHGRALVHGQTEGDGERLLTAPLPDLHGTP
EAPLAALDVFLRHLPTEGRVILAAESPGRQEALSERLGKAGLLPVRVHDWPEFLAGTERI
AITVAPLERGLLIKENGQVRLALISEAQIFGDRVFAQRRSAHARQRSIEGLVRDLGDLQP
DDPVTHEEYGIGRFQGMATPFAAQGDINEYVVLEYANGDLVYVPADHLDRITRYVGNGAT
EPVLSRLGSNHWEKAKAKARQKAIDAATELLDIYARRAARAGRAFPAPDDAYWEFVSRFP
FEETPDQQQAIDAVISDMTSPHPMDRLVCGDVGFGKTEVALRAAFLAAHGGTQVAVLVPT
TLLAQQHYKNFQDRCAGLPLRVEVLSRFQSAKAHKQVLAAVAAGEVNILIGTHRLLQKDV
TFHDLGLLILDEEHRFGVRQKERIKALRAEVDILTLTATPIPRTLNLSLAGLRDLSIIAT
PPQRRQPVRTFVQIWDDATVVEACQREMHRGGQVYFLHNEVRDIERMATTLRRLLPDARL
RVAHGQMPESELEAVMLDFYHQRFDILLSTTIIESGIDNPHANTILINRADKFGLAQLHQ
LRGRVGRSHQRAYAYLFTPDPRAMSDDARRRLDAIQSLEDLGVGFALASHDLEIRGAGEL
LGEEQSGHMDEIGFTLFMEWLNDAVEAIRAGRDPHSLEDRRASGPEIHLNTPALIPDDYL
PDVHLRLQFYKRLSDVRSDAAIGEIMVEMIDRFGPIPAPTRTLLCQTQLRLLATQIGIER
IDAGPAGARLQFAAENQVAPEKIRLLATWSGYGGAVLLGYC
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
ttggatcgaagtctttttctcggcaccccgccgcgcgccggggcggcacgcgcatttagt
caattctacggtgccgcggatagctggctggcggcgcagatggcacgccagtggcagcgt
ccgctgctgattctgctgccgaacgcccgtgacgtggaggaatggcagcgcgagtggcgt
tttttcgcaccggacttaccagcgccgctgattttcccggaccgcgaaatccttccctat
gatcgcctggcgccgccggcagatgccacggccacccggctggccacccttgctgctctg
ccggaatggcgtggcgtttgtctcgcccctctgtccgccgtcctgcaacgcctgccaccg
cgtagttttctcgaccagcacgcttttgtcctcgccgtgggtgaccatctgagtccggaa
ggtttccgtcaacgcctgattgatgctggctatcgcaatgtcagtgaggtctcggaggct
ggcgaattggcctggcgcggcggaatcatcgatctctttcccagtggcagcaccctaccc
taccgcattgaactcttcgataccgtggtagaaagcatccgtgccttcgatccagaaacc
cagcgtaccctgcaaaaggtcgagcgggtctccctgctcccggcgcgggaggtaccggtg
gacgctgccgcgctgcaggaatttcgcagccggttccgcgcccgcttcagcggtgatcca
caacgtgccgagatttatcgaacggccagccgcggacaggtcccccaaggggctgagcat
tatctcccgctattcttcccccagagcagccatctgctcatgcacttcgccaaagatggt
atcgtctttctgccccctggcctggagacatccgcccggcacattcgccaggactggcag
gagcggcatgaggagcgggcccacgatacggcttatcccatactaccccccgacgaactc
ctcttaacccccggtgaatgggaagacatcctgcacggtcgtgcgctggtgcatggtcaa
acggaaggcgacggagagcgtctactgacagcccccctacctgatctgcacggcacaccg
gaagcgccattggccgcgctcgacgtctttctgcgccacctgcccacagagggccgggtc
attctcgctgcggaatcgccaggccgtcaggaggccctctcagaacgcctcggcaaagcg
ggtctgcttcctgtccgtgtccatgactggccggagttcctggcgggtacagaacggatc
gccatcaccgtagcccccctggaacgcggcctgctcatcaaggaaaatggccaggtcaga
ctagcgctgatctccgaggcgcagattttcggtgaccgcgtctttgcccaacggcgcagc
gcccatgcccggcagcgtagcatcgaaggcctggtccgtgatctcggcgatttgcagccg
gatgaccccgtcacccacgaagaatatggcatcggccgttttcagggcatggccacgccc
tttgcggcgcagggcgatatcaacgaatacgtggtcctggagtatgctaacggcgatctc
gtctacgtcccggcggatcatctggatcgtatcacccgctacgtgggtaacggtgcaacg
gagccggtgctctctcgcctgggcagcaatcactgggaaaaggcaaaagccaaggcgcgg
cagaaggcgattgatgccgccaccgagctgctggatatctatgcccggcgcgcggcacgc
gccgggcgggcttttcccgcgccggatgacgcctactgggaattcgtgtcccgttttccc
tttgaagaaactccggatcagcagcaggccattgacgcagtcattagcgacatgaccagt
ccccatcctatggatcgcctggtctgcggcgatgtaggcttcggcaaaacggaggtggca
ctccgcgcggcctttctggcggcgcacggcggtacacaggtggcggtgctggtacccacc
accctcctcgcccagcaacattacaaaaattttcaggatcgctgcgccggactgcccctg
cgcgtggaggtgctctcccgtttccagagcgccaaggcgcacaagcaggtgctcgccgcc
gtggccgccggggaggtgaatatcctcatcggcacccatcgtctgctgcaaaaggatgtc
actttccacgatctgggcctgctgattctcgacgaggaacaccgcttcggcgtccgccag
aaagaacgaatcaaggccctgcgcgccgaggtggacattctcaccctgaccgccacgccg
attccgcgcaccctgaatctatccctcgccggtctgcgcgacttatccatcatcgccacc
ccgccccagcgccgccagccggtacgcacctttgtccagatctgggatgacgcaacggtg
gttgaggcctgccaacgcgaaatgcatcgcggcggtcaggtgtacttcttacacaatgaa
gtgcgcgacattgagcgcatggccaccaccctgcgccgcctgctgcccgacgcccgtctg
cgcgtcgcccatggccagatgcccgaaagcgaactggaagcggtgatgctggatttttat
caccaacgcttcgacatactcctcagcaccaccattatcgaatccggcatcgacaatccg
cacgccaacaccatcctcatcaatcgtgccgacaaattcggactcgcccaactccatcag
ttgcgtggccgggtgggacgctcgcatcagcgcgcctacgcttatttgttcaccccggac
ccgcgtgccatgagcgacgatgcccggcgccgtctggatgccatccagtctctggaggat
cttggcgtcggcttcgccctggcgagccacgatctggaaatccgcggggctggtgagctg
ctcggtgaagagcagagtgggcacatggatgagatcggcttcaccctctttatggaatgg
ctgaacgatgcggtggaggccatccgtgccggacgcgatccccacagtctcgaagatcgg
cgcgccagcggcccggaaatccatctcaacaccccggcgctcatccccgacgattacctg
ccggatgtacacctgcgcctgcaattctataaacgcctcagtgatgtgcgcagcgatgcc
gcgatcggagaaatcatggtggagatgattgaccgcttcgggcccattcctgcacccacc
cgcaccttgctctgccagacccagttgcgcctgctggccacccaaattggcatcgaacgg
atcgacgccggccccgccggtgctcgtctgcaatttgccgccgaaaatcaggtggcccct
gaaaaaatcaggctcctcgctacttggagtggatacgggggtgcggtactcttaggatat
tgctga
DBGET
integrated database retrieval system
