Acidithiobacillus ferrivorans: Acife_2716
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Entry
Acife_2716 CDS
T01595
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
afi
Acidithiobacillus ferrivorans
Pathway
afi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Acife_2716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afi03021
]
Acife_2716
03400 DNA repair and recombination proteins [BR:
afi03400
]
Acife_2716
Enzymes [BR:
afi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Acife_2716
Transcription machinery [BR:
afi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Acife_2716
DNA repair and recombination proteins [BR:
afi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Acife_2716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Tail_completion_gp17
Motif
Other DBs
NCBI-ProteinID:
AEM48793
UniProt:
G0JRT9
LinkDB
All DBs
Position
complement(2689571..2693734)
Genome browser
AA seq
1387 aa
AA seq
DB search
MNALKDLLKLFKQNDQQEEFDAIRIGIASPDKVRSWSFGEVKKPETINYRTFKPEREGLF
CAKIFGPIKDYECLCGKYKRLKHRGVVCEKCGVEVTQARVRRERMGHIELASPVAHIWFL
KSLPSRMGMILDMPLRDIERVLYFEAYVVVDPGVTALERGNILTEDQYLDALEEHGDEFT
AKMGAEGIRDLLRGIPLTQEIERIRNELRESNSDTKTKKLSKRLKILEGFEQSGNRPEWM
ILEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKR
MLQEAVDALLDNGRRGRAISGPNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVV
GPELRLHQCGLPKKMALELFKPFIFNKLEERGLATTIKAAKRLVEQEKPEVWDILEEVIR
EHPVMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLSLEAQ
LEARTLMMSTNNILSPANGEPVIVPSQDIVLGLYYVSQERADAKGTGGIFADTAEVRRAY
ETGNLGLHARIIVRFRGERMDTTAGRALLGDILPEGLPFSVINRVLKKKVIGELINICYR
RLGVKDTVIFADQLMYTGFRMATRAGISFGAGDMVTPPEKEGILARSEDEVKAIQDQYTS
GLVTEGERYNKVVDIWSRATDEVAKAMMDRVSKDTVYLPDGSSVQQDSFNSIFMMADSGA
RGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKT
ANSGYLTRRLVDVTQDLVVVETDCGSEEGLPMTSLVEGGEVIEPLRDRVLGRVVAEDVVH
PNTGEVVIARNTLLMEQHLGQLDELGVDALKVRSPLTCRSRHGVCALCYGRDLARGHLVN
AGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAQSSIDIKQGGVFRYQPNLRLVTHS
SGRHVVVGRNGEVTVTDEQGREKERYKVPYGATILVDDNASVTAGRRVAEWDPHTRPIVS
EVGGKISLKDAVEGASVAIQTDEITGLSTLVVIDAKQRPPQGRDLRPVISLLDEHGQDLK
LPGTDLPARYFLPAKAIIAVHEGMEIHPGDILARLPVGTTKTRDITGGLPRVAELFEARR
PKDFAVIAEHEGIIGFGKDTKGKQRLIITDENGDQHEYLIPKGRHVTVYEGERVSPGEQL
VEGQPVPHDILRVLGVQALANYIVDEVQDVYRLQGVRINDKHIEVILRQMLRRVEVTFSG
DSTFIPGDQVDRARVEDENIKLEAAGKELARFTPMLLGITKASLSTESFISAASFQETTR
VLTEAAVSGKVDDLRGLKENVIVGRLIPAGTGLAYHEHRRRLSRGEPVHSVEKAVRSDLS
VAVTETQ
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccttgaaagacttgttaaagctcttcaaacaaaacgatcagcaagaagaattc
gatgcgattcggatcggtatcgcgtctcctgataaggtacggtcatggtcctttggcgaa
gtaaaaaagccggaaacgatcaattaccggaccttcaagccggagcgcgaggggctgttc
tgtgccaaaatttttgggccgatcaaagactacgagtgcctctgtggtaagtacaagcgt
cttaagcaccgcggcgtagtctgtgaaaagtgtggcgttgaggtgactcaggcgcgagtc
cggcgtgagcggatgggacacattgaacttgccagccccgtcgcgcatatctggtttctc
aaatctctgccgagtcgcatgggcatgattctcgatatgcccctgcgcgatatcgaacgg
gtcctttattttgaggcgtatgtggtggttgatccgggtgtaactgcccttgagcgcggg
aacatcctcaccgaagatcagtacttggacgctttagaagagcacggtgacgaatttacg
gccaaaatgggtgccgaaggtatccgcgacttgttgcgcggtattcccctgacgcaagaa
attgaacggatccgcaatgagctgcgggagagcaactccgatacaaagacgaaaaagctc
agcaagcgcctcaagattctggaaggctttgagcagtccggcaatcgtcctgagtggatg
atcttggaagtgctccccgtgttgccaccggatctgcgcccgctggtacctctggatggc
gggcgcttcgcgacctccgatctcaacgatctctatcggcgcgttattaaccgcaacaat
cgattgaagcgcctgctagaactgaaggctccagacatcattgtccgtaacgaaaaacgt
atgttgcaggaagcagtggatgcgcttctggataacggacgtcgcgggcgcgccatctcc
ggtcccaacaagcgtccgctcaaatcactggcggacatgatcaaaggtaagcagggtcgt
tttcgccagaacctgctcggcaaacgggtggattattccggccgctccgttatcgtcgtc
ggacctgagctgcgtttgcatcagtgcgggttgccgaagaaaatggccctggagctattc
aagcccttcatctttaacaagttggaggagcgtggcctggcgaccaccatcaaggccgcc
aagcgcctggttgagcaggaaaagccggaggtctgggatatccttgaagaggtgatccgc
gagcatccggtgatgctcaaccgtgcacccaccttgcaccgtcttggtatacaggctttt
gagccgatactgatcgaaggtaaggctattcaattgcacccgctggtgtgtgctgcgtat
aacgccgatttcgatggcgatcagatggcagtgcatgtcccgctttcgctggaggcacag
ctggaagcgcggacattgatgatgtccaccaacaatattctgagcccggccaacggggaa
ccggtgattgtgccgtctcaggacattgtacttggactttactacgtcagtcaggaacgt
gcagacgcgaagggtactggtggtattttcgcggatacggcggaagtgcggcgtgcttac
gaaaccggcaatctggggttgcacgctcgaatcatcgtccgctttcgcggggaacgtatg
gataccacggcaggacgtgccctgcttggggatattcttcccgaaggcctcccctttagt
gtgatcaaccgggtgctgaagaaaaaggtgatcggtgagctgattaatatctgttaccgc
cgcttgggtgttaaagacaccgtcatttttgccgaccagttgatgtatacaggctttcgc
atggccacccgtgcgggcatttccttcggtgcgggagacatggtgacccccccggaaaag
gagggcattctggcgcgctccgaggatgaggttaaagccattcaggaccaatatacctcg
ggtctggtgaccgagggcgaacgctataacaaggtcgtcgatatctggtcgcgcgctact
gatgaagtcgccaaggccatgatggatcgggtcagcaaagatacggtgtacttgcccgat
ggcagctcggtccagcaggattcgttcaactctatatttatgatggccgattccggggcg
cgtggttcggcggcccagatccgtcagcttgccggcatgcgtggcctgatggcaaagcct
gacggctcaattattgaaacccccatcaccgcgaacttccgtgaaggtctcaacgttctg
cagtactttatctccacccacggtgcccgtaagggtcttgccgataccgcgctaaaaacg
gcgaactccggatatttaacgcggcgtctggtggatgtgactcaggatctggtcgtggtt
gagaccgattgcggttcggaggaaggtctgcccatgacctctctcgtggagggtggtgag
gtcatcgaaccactgcgcgaccgcgtattgggtcgtgtagtggcggaagatgtggttcat
cccaacaccggtgaagtcgtcattgcccgcaataccctgctcatggaacagcacctgggt
caattggacgagttgggtgttgatgccctgaaggtgcgttcaccgctaacctgtcgttca
cggcatggtgtctgtgcgctgtgttacggacgtgatctggcgcgcggccatctggtcaat
gcgggcgaagcggtcggcgttattgctgcccagtccattggtgaaccaggtacccagctg
actatgcgcacctttcacatcggtggtgcagccagtcgttctgcggcacagagcagcatc
gatattaagcagggcggggtgttccgttaccagcccaaccttcggctggtcacccactcc
agtgggcgccatgtggtcgtcggacggaatggtgaggtgacggtcaccgatgagcagggg
cgtgaaaaggagcgttacaaagtaccttacggcgcgaccatcctggtggatgacaatgca
tcggttactgcaggccggcgggtggcagaatgggatccgcatacgcggcctattgtcagc
gaagtcggcggtaaaatttctttgaaagatgcggtggaaggcgcgagcgtggccattcaa
accgacgaaatcacagggctgtcgacgcttgtcgtcatcgatgctaaacaacgcccaccg
cagggccgcgatttgcggccggtgatcagtttgctggatgagcatggccaggatctgaaa
ttgccgggcaccgatttgccggcacgttatttcctgccggcaaaggcgattatcgcggtg
catgaaggcatggaaattcatcctggtgacattctggcacgtttgccggtgggtaccacc
aagacgcgcgacattaccggtggtttgccccgagtggctgaactctttgaggcacgacgt
cccaaggacttcgctgttatcgcggagcacgagggcatcattggcttcggcaaagacacc
aagggtaagcagcgactgatcatcaccgacgagaatggggaccagcacgagtatcttatt
cctaaaggtcgccacgtgacggtctacgaaggcgagcgggtcagtcccggtgagcagctc
gtagaggggcagccggttccacatgatattttgcgcgtattaggtgtgcaggctttggcc
aattacatcgtcgatgaagtgcaggatgtataccgtctgcagggcgtgcgtatcaatgat
aagcatatcgaggtaattctgcgccaaatgctgcgcagggtcgaggtgacatttagcggg
gatagcacctttattcccggcgaccaggtagaccgggcgcgggttgaagatgaaaatatc
aagctggaagctgccggcaaagaactggcgcgctttaccccgatgctgttgggcatcacc
aaggcaagcctgtccacggaatccttcatctcggcggcgagtttccaggaaaccacccgc
gtactcaccgaggccgcagtatcaggcaaggtggacgacttgcgaggtctgaaggaaaac
gtcattgtcggacgtctgatacccgcagggacgggtctcgcttatcatgagcatcgtcgg
cgactgagtcgcggggagcctgtccattccgtggagaaggcggtgcggagtgatctctcc
gtagcggtaaccgaaacccagtaa
DBGET
integrated database retrieval system
