Acidithiobacillus ferrivorans: Acife_2717
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Entry
Acife_2717 CDS
T01595
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
afi
Acidithiobacillus ferrivorans
Pathway
afi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Acife_2717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afi03021
]
Acife_2717
03400 DNA repair and recombination proteins [BR:
afi03400
]
Acife_2717
Enzymes [BR:
afi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Acife_2717
Transcription machinery [BR:
afi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Acife_2717
DNA repair and recombination proteins [BR:
afi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Acife_2717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
PAAR_motif
Motif
Other DBs
NCBI-ProteinID:
AEM48794
UniProt:
G0JRU0
LinkDB
All DBs
Position
complement(2693758..2697846)
Genome browser
AA seq
1362 aa
AA seq
DB search
MAYSFTEKKRIRKDFGKSQSILAVPYLLATQMDSYREFLQESVPPAARKATGLEAVFRSI
FPMESYSGNATLDYVSYRLEKPVFDVVECRQRGLTYCAGLRVRLRLAVMEKDDATGAKRV
KDVKEQDVYMGELPLMTEHGSFVINGTERIIVSQLHRSPGVFFDHDRGKTHSSGKLLFNA
RIIPYRGSWLDFEFDPKDHVYARIDRRRKLPATTLLRALSYSTQDILEMFFDTETFRIID
GELRYVLIPQRLQGEMATFDIANPHTGEVLVQTGKRITVRQTKALAEVTGMHEIPVPDAF
LLGKVVARDVVHPETGEVLVQANEPVSAEVLDVLRQGPSLTLHTLYINELDRGPYISETL
RVDTSRDAHEAQMEIYRLMRPGEPPTKDAAQNLFQGLFFSPDRYDLSAVGRMKFNRRVGR
DEITGPGVLNNEDIVAVLKVLLALRNGVGEIDDIDHLGNRRVRSVGELMENQFRLGLVRV
ERAVKDRLALAESEGLTPQDLINAKPIAAVVNEFFGSSQLSQFMDQTNPLSEVTHKRRVS
ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSCYARTNSYGFLETPY
RRVVDCRATDEIEYLSAIEEGNYTIAQANSAVDENGVLTDELVSCRHKNEFTLANPDQVQ
FMDVSPRQIVSVAASMIPFLEHDDANRALMGSNMQRQAVPTVRSDAPMVGTGMERVVAID
SGAAVVARRGGVVDIVDGARIVIRVSDEETLPEEPGVDIYNLVKYARSNQNTTLNQRPVV
KVGDMVSCGDVLADGPSTEMGELALGQNILVAFMPWNGYNFEDSILISERVVAEDRYTTI
HIEEFSVFARDTKLGPEDITRDIPNVAEGALRHLDESGIVVIGAELAPGDILVGKVTPKG
ETQLTPEEKLLRAIFGEKASDVKDNSMRMPAGMYGTVIDVQVFTRDGIEKDTRAKSIEEH
ELARIRKDLNDQYRIVEEDSYQRIERQLTGKVAEGGPNGLAAGNKVTKAYLKDLPRSKWF
EIRLRTEESNESLEQIRAQLEDQRQRLDAVLEEKRRKLTQGDDLSPGVLKMVKVHVAIKR
HLQPGDKMAGRHGNKGVVSKIVPVEDMPYLADGTPVDIVLNPLGVPSRMNVGQILETHLG
WAAKGLGKKIGGMLDSEVAMTEMRAFLAEIYNRSGKKEDLDSLTDQEIRELATNLRGGVP
MATPVFDGASEDEIRDMLELADLPRSGQVTLYDGRTGDAFDRPVTVGYLYMLKLHHLVDD
KMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGR
SKMYESIVKGDFRMDAGMPESFNVLLKELRSLGIDIELEQSK
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atggcctactcttttactgaaaagaaacggattcgtaaagactttggcaaaagccagagc
attcttgctgtgccatatctgctggctacgcagatggattcctaccgggagtttctccag
gagtctgtgcccccggcagcgcgaaaagcaacgggtttagaagctgttttccgctcgatt
tttccgatggagagctattctggcaacgctacgctggattatgtttcctaccgtctcgaa
aaaccggtgttcgatgtggttgagtgccgtcagcgtggactgacgtactgtgccgggctg
cgtgtgcgcctgcgcctggcggtgatggaaaaagatgacgccacaggagccaagcgcgtt
aaggacgtgaaggagcaggatgtctacatgggcgaactgccgctgatgactgagcacggt
tctttcgtgatcaacgggaccgagcgtattatcgtttcgcagttgcatcgttcgccgggc
gttttcttcgatcatgatcgtggtaagacccattcttcgggaaagcttctttttaacgcg
cgtatcatcccttaccggggttcgtggttagacttcgaattcgaccccaaggatcacgtc
tatgcgcgtatcgatcgtcgtcgtaaattgccggcaacgacccttctgcgcgcgctaagc
tacagcactcaagacattcttgagatgttttttgatacagagactttccgtatcattgac
ggtgagctgcgatatgttttaatcccccagcgcttgcagggtgaaatggcgacctttgat
atcgccaatccgcacaccggtgaagtattggtgcagacgggcaaacgaattactgtccgt
caaacaaaggcgctcgccgaggttacaggcatgcacgagatccccgtgcctgatgccttc
cttctgggtaaagtcgtcgccagagatgtcgtgcacccagaaaccggcgaagtgctcgtg
caggcgaatgagccagtcagtgctgaggtcctggatgttctgcgtcaggggccatcgctc
acgctacataccctatatatcaatgagttggatcgcgggccttacatttctgaaacgttg
cgtgtcgatacgtcgcgggatgcccacgaggcgcagatggaaatctatcgtctgatgcgt
ccgggtgaaccaccgacgaaggacgcggcccagaacctttttcaggggctcttcttcagc
ccggatcgctatgatctgtctgctgtaggccgcatgaaattcaatcgcagggtgggtcgc
gacgagattactggtcctggcgtactcaataacgaggatattgtcgcggtgctcaaagtg
ctgcttgccctgcgcaatggcgtcggcgagattgatgatatcgaccatcttggtaaccgg
cgagtgcgctcagtcggtgagttgatggagaaccagttccgcctcggtctggtacgtgtc
gagagagccgtgaaggatcgtctcgcgctcgccgagagcgagggcctcacccctcaggat
ctcatcaacgccaagcccattgcggcagtggtcaatgagttcttcggctccagccagctc
tcccagtttatggatcagactaatccgctttcggaggtcacccataaacgccgggtttcc
gcactggggccgggcggcttgacccgtgagcgggcgggcttcgaggtgcgtgacgtacat
ccgacacattatggccgtatctgcccgattgaaacgccagaaggcccgaatattggtttg
atcaatagtttatcctgctatgcacgcactaattcctatgggtttctcgaaacgccttat
cggcgcgttgtcgattgccgtgcgaccgatgagatcgaatatctgtcggctattgaagag
ggtaattatacaattgcccaagcgaactccgcggtggacgaaaatggtgtgctgaccgac
gagctcgtctcttgccgacacaagaatgaattcaccctggcgaaccccgatcaagttcaa
ttcatggatgtttcgccgcggcaaattgtctcggtagcggccagtatgattcccttcctg
gagcatgatgacgctaaccgagccttaatgggttctaatatgcaacgtcaggcggtgccg
acggtgcgctctgacgcgccgatggtgggcacgggcatggagcgggtagtcgccattgat
tctggtgcggcggttgtcgcgcggcgtggtggtgtggtggatatcgtcgatggcgcccgt
atcgtcattcgcgtcagtgatgaagaaaccctgccggaagagcccggtgtagatatctac
aacctcgtgaagtacgcacgttcgaaccaaaacacgacactgaatcagcgccccgtggtc
aaggtgggtgatatggtcagttgcggtgatgtgctagccgatgggccgagtacggagatg
ggtgaactggcgcttggccaaaatattctagtggcctttatgccctggaacggctacaac
tttgaggactccattttgatctcggaacgggtggtggctgaagaccgctacaccaccatt
catatcgaggagttctcggtctttgcgcgtgacaccaaactgggaccagaggacattacc
cgggatattcccaacgtcgcagagggcgccttgcgccacctcgatgagtccggcatcgtg
gttatcggtgcggaattggcgcctggtgacattctcgtcggcaaagtcacgcccaagggt
gagacccagttgacgccggaagagaaactcctacgggcgatcttcggtgaaaaggcctcc
gacgtgaaagataactccatgcggatgcctgccggtatgtatggcacggtgatcgacgtg
caggtctttacccgcgacggtattgagaaggatacccgcgccaagtccattgaggagcat
gagctcgcacggattcgtaaggatctgaacgatcagtatcgtatcgttgaggaagatagt
tatcagcgtattgagcggcagcttactggtaaggttgccgagggtggacccaacggtctt
gcggccggaaacaaggtgacaaaggcttatctgaaggatttgccgcgcagtaaatggttt
gagatccgtttgcgtacggaagagagcaacgagtctctggagcaaatccgtgcccagctc
gaggatcagcgccaacgtctcgacgccgtactcgaagaaaagcggcgcaaactgacgcaa
ggggatgatctgagtccaggtgtcctgaagatggttaaagtgcatgtggccatcaaaaga
cacctgcagcccggcgataagatggccggacgccatggtaacaaaggtgtggtctcgaag
atcgttcccgtagaagatatgccttatcttgccgacggtacgccggtagatattgtgctc
aatccgctgggcgtgccgtcacgaatgaacgtgggacagattctcgaaacccatctgggg
tgggcggctaagggtctgggtaagaaaatcggcgggatgctggatagcgaggttgctatg
acagaaatgcgcgcctttctcgcggagatttacaatcgttctggcaaaaaagaggatctc
gacagtctgactgatcaggaaatacgcgagctcgccacgaatcttcgcggtggtgtgccc
atggcgactcctgtctttgatggcgcctctgaagatgagatccgcgatatgctggagttg
gccgatttgccgcgcagcggtcaggtcacactgtatgatgggcgaaccggtgatgccttt
gaccgcccggtaacggtgggctatctctacatgctcaagctccatcacctggtggatgac
aagatgcatgcccgttccaccggaccttacagtctggtcacccagcaacccttaggtggc
aaggcccagtttggtggccagcgctttggtgaaatggaggtgtgggcgttggaggcctat
ggtgcggcttacaccctgcaggaaatgctcaccgtgaagtcggacgacgtaagcgggcgc
agcaaaatgtatgagtccatcgtcaagggtgatttccgcatggatgccggaatgccggag
tctttcaatgtgctgttgaaagaactgcgctctttgggtatcgatattgaattggaacaa
tccaaataa
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