Acidithiobacillus ferrivorans: Acife_3104
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Entry
Acife_3104 CDS
T01595
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
afi
Acidithiobacillus ferrivorans
Pathway
afi03420
Nucleotide excision repair
afi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
afi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Acife_3104
03430 Mismatch repair
Acife_3104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afi03400
]
Acife_3104
Enzymes [BR:
afi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Acife_3104
DNA repair and recombination proteins [BR:
afi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Acife_3104
MMR (mismatch excision repair)
Other MMR factors
Acife_3104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEM49176
UniProt:
G0JL61
LinkDB
All DBs
Position
complement(3038808..3040937)
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AA seq
709 aa
AA seq
DB search
MSEWSALNPRQLEAVTLPPGPALVLAGAGSGKTRVLTSRIAHLLEGDVHPGEILAVTFTN
KAARAMRGRLDDMVAMDLRALWMGTFHGLAHRLLRMHHAALGLPADFQVLDADDSQRLLR
RIMREAQMDEKQWPPRAMAGRVGRWKDEGWGPEQVQQYEGLAAAPFIPIYSAYEAAKKRS
GLVDFGDLLLYALRLWESPEILDHYQRRFQHILVDEFQDTNAVQYAWLKGLARHGQIFVV
GDDDQSIYAWRGARVENLLRFSDDFAGAQVVRLEQNYRSSAPILQAANAVIAHNPDRLGK
TLWTAEPGGEAIQLYTAYNEVDEARYVVGRIQRWLEADGRRAECAILYRSNAQSRAFEEV
LVREGMPYRVYGGLRFFERAEIKDTLAYLRLTVNHHDDAAFERVVNVPARGIGAVSVERL
RHLARARGLSLWQAAGELGQPKINAFLNLLDDLAARTAETDLGERVETVLARTGLREWHS
RESDRAEGRLENLDELINAARSYAQDWAADPNLGDLVPQPGNMLSEFLTHAALEAGDGAG
DAWEDCVQLMSLHSAKGLEFPLVFLVGLEEGLFPHQRSLEDPQGLAEERRLCYVGMTRAM
RLLVISHAESRRLHGSERMTMPSRFLREIPQELLQELRPRARISRPAIPVRAAAPDMPFP
LGSRLQHPVFGEGMVLDYEAGGRQGRIQVQFASGSKWLALGVVALERLP
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgaatggtctgctctcaatccccgccaactggaggcggtgaccctgccgcccggc
ccagcgctggtgctggccggggcgggctcgggcaaaacgcgggtgctgaccagccgcatt
gcccatttgttggaaggagacgtacaccccggcgagattctcgcggtgaccttcaccaac
aaggcggcacgcgccatgcgcgggcgcctggatgacatggtggccatggatttgcgggcc
ttgtggatgggaaccttccacggcctcgcccaccgcctgctgcgcatgcatcacgcggcg
ctgggcttgcccgcggattttcaggttctggatgccgacgatagccagcgcctgctgcgg
cggatcatgcgtgaagcgcaaatggatgagaagcagtggccgccgcgggctatggccggg
cgtgtcggtcgctggaaagacgaaggttgggggccggagcaggtgcaacaatatgagggc
ctagcagcggcacccttcattcccatctacagcgcctatgaagcggctaaaaagcgctcc
gggttggtggacttcggtgacctgttgctctatgccttgcgtctctgggagtcgccggaa
atcctcgatcattatcagcgccgttttcagcatattctggtggacgagtttcaggacacc
aatgcagtgcaatacgcctggctgaagggactggcgcggcatgggcagattttcgtggtc
ggcgatgacgaccagtccatctatgcctggcgtggtgcgcgcgtggagaatttgctgcgc
ttcagtgacgactttgccggggcacaggtggtgcggctggagcagaactaccgttcgtcg
gcacctatcctgcaagccgccaatgcggtcatcgcccacaaccctgatcgtctcggtaaa
accctgtggacggcggagccgggcggtgaggctattcagctctatacggcctacaatgag
gtcgatgaggcgcgctatgtggtgggccgcattcagcgctggctggaagccgatggtcgc
cgtgccgaatgtgccatcctctatcgctccaacgcccagtcgcgggcttttgaagaagtg
ttggtgcgcgaaggcatgccctatcgggtctatggcggcctgcgtttcttcgagcgtgcc
gagatcaaggatacgctggcctacctgcgcctcacggtcaatcaccatgacgatgccgcc
tttgagcgggtggtgaatgtgcccgcgcgcggcatcggtgcggtcagcgtcgaacgtctg
cgtcatctggcccgtgcgcgtggcctctcgctctggcaggcggccggagaactgggtcag
ccgaaaatcaacgccttccttaatctgctggatgatctggccgcgcggacggcagagacg
gatctcggcgagcgggtggagaccgtgctggcccgcaccggcctgcgtgagtggcacagc
cgcgagagcgatcgtgccgagggacggctggaaaacctggacgagttgatcaacgccgcg
cgcagttatgcccaggactgggccgccgaccctaatctgggtgatctggtgccgcaaccg
gggaatatgctctcggaatttctgacccatgcagcgctggaggctggggatggcgctggc
gatgcctgggaagactgcgtgcaattgatgagtttgcacagcgccaagggcctggagttc
ccactggtgtttctggtggggctggaagaagggctcttcccccatcaacgctctctggaa
gaccctcaaggactggccgaggaacggcgtctttgttatgtgggcatgacccgcgccatg
cgcttgctggtcatcagccatgccgagagtcgccgcctgcatggcagtgaacggatgacc
atgccctcccgctttttgcgggagattccccaggaactcctgcaggaactgcgaccgcgg
gcgcggatcagccgaccggctatacccgtgcgggcagcggcaccggatatgccctttccg
ctgggctcgcgcctccagcacccggtctttggcgaggggatggtgctggactatgaggca
ggcggtcgccagggccggattcaggtgcagttcgcctcgggcagcaagtggctggcgctg
ggggtggtggctttggagcggttgccttaa
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