Amphiura filiformis: 140135460
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Entry
140135460 CDS
T10871
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
afil Amphiura filiformis
Pathway
afil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140135460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afil03021
]
140135460
03041 Spliceosome [BR:
afil03041
]
140135460
03036 Chromosome and associated proteins [BR:
afil03036
]
140135460
Transcription machinery [BR:
afil03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
140135460
Spliceosome [BR:
afil03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
140135460
Complex B
140135460
Complex C
U2 SnRNP specific factors
140135460
Chromosome and associated proteins [BR:
afil03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
140135460
TFTC complex
140135460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_BBS7
Beta-prop_EML
WDR55
Beta-prop_LRRK2
WD40_WDHD1_1st
Motif
Other DBs
NCBI-GeneID:
140135460
NCBI-ProteinID:
XP_072013068
LinkDB
All DBs
Position
16:complement(5900928..5932443)
Genome browser
AA seq
1218 aa
AA seq
DB search
MFLYSLTLQRATGIVQTIHGNFAGSKQQEIIVARGKLLELIKLDPNTGKLYTVLTHEIFG
VIRSLMAFRLTGGSKDFIVIGTDSGRIVIMEYNASKNAFERVHQETFGKSGCRRIVPGQY
LAIDPKGRAVMISAVEKQKLVYILNRDAQARLTISSPLEAHKSNTFSYHIVGVDVGFENP
MYACLEIDYEDADQDPTGEAAQNTQQMLTYYELDLGLNHVVRKYSEPLEEHGNFLIAVPG
GNDGPSGLLICSENYVTYKNLGDQPDIRMPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRMKYFDTVPVSTSMNVLKTGFLFVSAEFGNHFLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFAPRALKNLVEVDQQESLSPIMNCKIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVKKKSDDEFDAYIIVSFIN
ATLVLSIGETVEEVTDSGFLGTTPTLSSSLIGDDALLQIYPGGIRHIRADKRVNEWKTPG
KKNIVKCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKDMSADVKCMSLASVPAGEQ
RARFLAVGLDDNTVRIISLDQSDCLQPLSMQALPAPAESLCIVEMGGSEGEAGEKPVTGG
LFLNIGLQNGVLLRMVLDSVTGDLSDTRTRYLGSRPVKLFRIKMQGSEAVLAMSSRSWLS
YWYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVSTPLK
YTPRKFAIHTESNNLIIIETDHNAYTDTTKAQRKQAMAEEMVEAAGEEERELAAEMAEAF
LNEDLPESVFGAPKAGAGMWASQIRLLNPIQGETLDTVQLEQNEAAFSLCVCKFANKGDD
VFVLVGTAKDLTLSPRTCSGGFIHTYQLTNEGTKLEFLHKTPIDDVPAAICPFQGRILIG
VGRLLRIYDMGKKKLLRKCENKHIPNFIVNINSIGNRIVVSDVQESLHFVRYKRQENQMV
IFSDDSHPRFVTASAILDHDTVAVGDKFGNFSVVRLPTNTNDEVDEDPTGTKALWDRGLL
NGASQKADSIASFHVGDTILSLEKATLIPGGSESLVYTTLSGAVGIMVPFTSHEDHDFFQ
HLEMHMRSEFPPICGRDHLSYRSYFFPLKNVIDGDLCEQFNSMEASKQRSVSEELDRNPS
EVGGSGCRFGYHYLITRM
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgttcttgtattcgctgaccctgcagcgagccacgggcatcgtgcagaccatccatggc
aactttgctggttccaagcagcaggagattattgtagcaaggggaaaactcctggaactc
atcaaacttgatccaaacactggtaaactctacacagtgttgacacatgagatctttggt
gtcatacgctcactgatggcattccgtttgactggcggtagcaaagatttcatcgtaatt
ggaacagactctggtcggattgtcatcatggagtacaatgcatccaagaatgctttcgaa
cgggtccaccaagagacttttggcaagagcggatgtcgacgtatcgtgccagggcagtat
ctggccattgatcccaaaggccgtgctgtgatgatcagtgccgtagagaaacagaagcta
gtgtatatcctgaacagagatgcgcaagccaggttgactatatcatccccactagaagca
cacaaatctaacacattctcataccacattgtcggcgtggatgtgggctttgagaatccc
atgtatgcttgcttggagattgattatgaggatgcggatcaggatcctaccggtgaagca
gctcagaatacacaacagatgctgacctattatgagttggatttaggtctcaatcacgtc
gtaaggaaatacagtgaaccattggaagaacatggcaactttctcattgctgttcccggt
ggcaatgacggaccaagtggtttgttgatctgctcagaaaactatgtgacatataagaat
cttggagaccagccagatatcagaatgccgatcccaaggagaaggaatgatttggatgac
cctgagagaggcatgatctttgtttgcagtgctacacataagaccaagtcaatgtttttc
ttcttggctcaaactgaacaaggagacatctttaaaatcacccttgaaactgacgaggat
atggtgacggagatccgcatgaagtactttgacaccgtccctgtgtctacctccatgaat
gtacttaagactggcttcctctttgtgtctgccgaatttggaaaccacttcttataccag
atagctcatcttggtgacgatgatgatgagccggaatttagcagtgccatgccattagag
gaaggcgataccttcttctttgccccaagagctctcaagaatttggtggaagttgatcag
caggagagcctgtcacccatcatgaattgcaagattgctgatttagccaatgaagacaca
ccacagctgtatgttgcatgtggcagaggaccacgttcatcactcagagtattgagacat
ggtctggaggtatctgaaatggctgtgtctgagctgccaggtaaccccaatgctgtatgg
actgtcaaaaagaagagtgatgatgaatttgacgcgtacatcatagtgtccttcatcaac
gctaccctggtattgtccattggtgagaccgtagaagaggtgacagattccggtttctta
ggaaccacgcccacattgtcatcatcacttattggagatgatgctctccttcagatctac
ccaggtggtattcgtcacatcagagctgacaaacgtgtcaatgaatggaagacaccggga
aagaagaatatcgttaaatgtgctgtcaaccaaagacaggtggtcattgctcttacaggt
ggtgaacttgtgtattttgaaatggacccaactggtcaattgaatgagtacactgagcgg
aaggacatgtcggccgatgtaaagtgcatgagtttggccagtgtgcctgctggtgaacaa
agggctagattcttggctgtaggtttagacgataacactgtcaggattatctcattagat
caatcagattgcttacaaccgttaagtatgcaggcgttgccagccccagccgagtcccta
tgtatagttgagatgggaggctctgaaggtgaagccggtgagaaaccagtcacaggtgga
ctctttcttaacattggtttgcagaatggtgtgttgctgagaatggtgttagattctgtg
actggtgatttatcagacacaaggacaagatatcttggctccagacccgtcaaactcttc
cggatcaagatgcagggttcagaagctgttcttgccatgtcaagtcgatcttggctgagt
tactggtaccaatctcgattccatctcacgccgctgtcatatgaaaccttggaatatgca
tcaggttttgcatctgaacaatgtccagagggtattgtagcgatctcaaccaatacgttg
agaattttggctttggaaaagctaggagcggtattcaatcaagtatcaacaccactgaaa
tacacaccacgtaaatttgccattcacactgagagtaacaatctgatcatcatagagact
gaccataatgcatacacagacacaaccaaggcacagcgcaaacaggcaatggctgaggaa
atggttgaggctgcaggggaggaggaaagagaactggctgctgagatggcagaagccttc
cttaacgaagacttacccgagagtgtatttggcgcccccaaggctggtgcagggatgtgg
gcatcacagatacgactactcaatccaatacagggggaaactcttgatacagtgcaatta
gaacagaatgaagcagcttttagtttgtgtgtgtgcaagtttgccaacaaaggagatgat
gtatttgtgctggtggggacagccaaagatttgacattgagtcctcgcacctgttccggt
gggtttattcacacatatcaactgacaaatgaaggcacaaagctagaattcctacataag
actccaatagatgatgtccctgctgccatctgtccatttcaaggaagaatactcattggt
gttggcagactgctcagaatatatgacatgggcaagaagaagctgcttcgcaagtgtgaa
aacaagcacattcccaatttcattgtgaacatcaacagcatcggcaacagaatcgttgtt
agcgatgtccaagagagcctccactttgtgcgttacaaacgacaggaaaatcagatggtt
atattctccgacgacagccacccacgcttcgtcaccgcaagcgccatattagatcatgat
acagtagcagttggcgacaaatttggaaacttcagtgtggtccggttgccaaccaacacc
aacgatgaagtggatgaagatccaacaggcactaaagcattatgggatagaggtctcctg
aatggtgcatcacagaaagcagattccatcgctagcttccatgttggagataccattctg
tcattagaaaaggccacacttatcccaggaggatcagagtcactggtgtatacgacgtta
tcaggtgctgtgggtattatggtgccatttacatcacatgaggaccatgactttttccag
caccttgagatgcacatgagatcagagtttcctccgatatgtggtagagatcatctgtca
tacagatcttacttcttcccactgaagaatgtaattgatggtgatttatgtgaacagttc
aactcaatggaggcaagtaaacagcgcagtgtgtcagaagaattggatagaaaccctagt
gaggtaggtggctctgggtgtaggtttggttatcattatctgattactagaatgtaa
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