Amphiura filiformis: 140136799
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Entry
140136799 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
afil Amphiura filiformis
Pathway
afil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140136799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140136799
03041 Spliceosome [BR:
afil03041
]
140136799
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
140136799
Spliceosome [BR:
afil03041
]
Complex B
Other components
Prp19-related factors
140136799
Complex C
140136799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_2
TPR_15
TPR_12
TPR_8
NRDE-2
ARM_TT21
Mad3_BUB1_I
TPR_7
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
140136799
NCBI-ProteinID:
XP_072014500
LinkDB
All DBs
Position
17:2828981..2885307
Genome browser
AA seq
848 aa
AA seq
DB search
MVTMPEKQKDILFEEDDLPYEEEILRNPYSVKCWIRYIEHKSDGLAAGRNLIYERALKEL
PGSYKLWYNYLKVRRKNVKGRCITDPGYEDVNNAFERALVFMHKMPRIWLDYCNFLQEQK
KVSRVRRTFDRALRALPISQHHRIWPHYLKFVCAHPLHETAVRVYRRYLKLFPENSEEYI
EYLVSIDRLDEAALRLADVVNQEDFVSKEGKSNHQLWYDLCELICKNPTKVTSLKVDPII
RGGIKRFSDERGKLWCSLADFYIRSGHFEKARDIYEESIQTVTTVRDFTQVFDAYAQFEE
SMISAKMETNAEMGQTEEDDIDLELKLERYEDLMDRRPLLLNSVLLRQNPHNVHEWHKRV
KLFDGKPKEIINTYTEAVQTIEPAIATGKLHTIWVEFAKYYESHSQIEEARVIFQKGTNV
AYIKVEDLASVWCEWAEMELRHENYDQALALMRRATAAPGRKVAYFDKSEPVQNRLYKCL
KVWSMYADLEESLGTYKTTKAVYDRIIDLRIATPQIIINFGMFLEEHKYFEEGYKAYEKG
IALFKWPNVYDIWNTYLTKFIERYGGKKLERARDLFEQCLDGCPKKFTKAIYLLYAKLEE
NYGLARHAMAVYDRATKGVLPEEQYEMFNIYIKRAAEIYGVTHTRAIYEQAIEVLSEEQA
REMCIRFADLERKLGEIDRARAIYGHCSQICDPRVTASFWQTWKEFEIKHGNEDTMREML
RIKRSVQATYNTQVNFMSAQMLAASKQPSATTSDLAGGGLDEMKLLEQRAQVMAAEAEAD
KPKLKKDILFVRGGSKAGDEQLAEAVRTANPEEINIDEDDEDSGEEIDEVQVETKTIPDE
IYGGIKND
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggtaacgatgcctgagaaacagaaagatatcttatttgaagaagatgacctaccatat
gaagaagagatcctgcgtaatccgtactcggttaagtgttggattcgctacattgaacac
aaaagtgatgggctagcagcaggcaggaatctcatctatgaaagggcactgaaagaactg
ccaggaagttacaaactatggtacaactacctgaaagtgcggagaaagaatgtgaaaggt
cgctgtataacagaccctggctacgaggatgtcaacaatgcatttgagagggcacttgtt
ttcatgcataagatgcccaggatatggctggattactgcaatttccttcaggagcaaaaa
aaagtgtcgcgtgttcgacgcacatttgacagggccctgagggcgctgcccattagccaa
catcaccgcatctggccacattatctcaagtttgtttgcgcacatcctttacatgagaca
gcagtcagggtatacagaagatatctgaagcttttcccagagaactctgaggagtacatt
gagtatttggtgtctattgatcgtctagatgaggcagcattaagactggctgatgtggtg
aatcaagaagactttgtctctaaagaaggcaaatctaatcatcagttatggtatgatctg
tgtgaattgatatgcaagaacccaaccaaagtgacgtccctcaaggttgatcccattatc
cgtggggggatcaagagattttcggatgagaggggaaaactctggtgttccctggctgat
ttctacatcaggagtgggcattttgaaaaggcaagagatatctatgaggaatctatccag
acagtgacaacagtcagagatttcacgcaggtgtttgatgcttatgcacagtttgaagaa
tctatgattagtgccaagatggaaactaatgctgaaatggggcaaactgaagaagatgat
attgatttggaactgaagctagagagatatgaagacctaatggatagaaggcctctgtta
ttgaacagcgtactactcagacaaaatccacataatgtacatgaatggcataaaagggtc
aagttatttgatggaaaacctaaagagatcattaatacctacacagaggcagtacagact
atagagccagcaatagctacagggaagctgcataccatatgggtggagtttgctaaatat
tacgagtcacatagccagattgaagaggctagagtgatctttcagaaaggtaccaatgtg
gcttacatcaaggtagaagacttagccagtgtgtggtgtgaatgggctgagatggaactt
agacatgaaaattatgaccaagcattagcattaatgagacgagcaacagcggcaccaggt
cgcaaagtagcttactttgataagagtgaacctgtgcagaatagattatataagtgcctc
aaagtgtggtccatgtatgcagatttagaagaaagcttgggaacatacaagaccaccaaa
gcagtatacgacagaataatagacctcagaattgcaacgccgcagataataatcaacttt
ggtatgtttctggaagaacataaatactttgaagaaggttataaggcttacgagaaaggt
attgccctgttcaagtggcccaatgtgtatgacatctggaatacatacctcaccaaattc
atagagagatatggtggtaagaagctggaaagagcaagagatttatttgagcagtgtctt
gatggatgcccaaagaaattcaccaaagctatataccttttgtatgccaaattagaagaa
aactatggtcttgcaagacacgctatggcagtgtatgacagggctaccaaaggagtgtta
cccgaggaacaatatgagatgttcaatatctacatcaagcgagctgctgaaatctacggt
gtcacacacaccagggctatatatgagcaggccattgaagtactcagtgaggaacaggct
agagaaatgtgcatacgatttgctgacctggaacgcaaactgggtgaaattgacagagcc
agagccatatatgggcattgttcacagatttgcgatcctagagtaacagcttctttctgg
cagacatggaaggagtttgagatcaaacacggcaatgaagatacaatgagagaaatgtta
agaataaagcgtagtgtgcaggcgacatacaacacacaggttaatttcatgtctgcacag
atgctagctgcctccaagcaaccttcagcaacaacatctgatcttgcaggaggtggtttg
gatgaaatgaaattactggagcaaagagcccaagttatggctgcagaagcggaagcagat
aaacctaaactcaagaaagatattctatttgtcaggggtggcagtaaggctggcgatgag
cagttagcagaagctgtgagaacagctaacccggaggagataaacattgatgaagatgat
gaagacagtggtgaagaaatagatgaggttcaagttgaaacgaagaccattccagatgag
atttatggcggcatcaagaatgattag
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