Amphiura filiformis: 140137329
Help
Entry
140137329 CDS
T10871
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
afil Amphiura filiformis
Pathway
afil03013
Nucleocytoplasmic transport
afil03015
mRNA surveillance pathway
afil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140137329
09122 Translation
03013 Nucleocytoplasmic transport
140137329
03015 mRNA surveillance pathway
140137329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140137329
03041 Spliceosome [BR:
afil03041
]
140137329
Enzymes [BR:
afil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140137329
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140137329
Spliceosome [BR:
afil03041
]
Complex C
Other components
EJC/TREX
140137329
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140137329
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
AAA_7
Motif
Other DBs
NCBI-GeneID:
140137329
NCBI-ProteinID:
XP_072015073
LinkDB
All DBs
Position
17:58679411..58689184
Genome browser
AA seq
316 aa
AA seq
DB search
MAEPSEETIGGDVSIEGDGVSTGGDDVLSVTEKTMKTGEAIGTDISADTTFQDLLLKPEL
LKAIQERGFERPTEVQRKCIPPIISGKDVLCEVKSGTGKSTAITLATLQNLTPEDGKISM
IVICHSRAKANQIAQDVRHFTKYLYTSPLKMGVFCGGRSAKGDKQKLKHTCPHIVIGTLR
RTMLLLRDKALNLKDVTQFVVNECVPLLEQNATKQDLEEIYRNTAHEKQVVMFSRRLVDR
VRPLCRWFFKLQESIEMCIDVDEPETGYVTKKAPEKDSQENMPVEMYINVDELETGDETK
KASEKDSEENMVNSAK
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atggcagagccatctgaagagacaataggaggtgatgtctccatagaaggagatggtgtc
tccacagggggagatgatgtactatcagtcacagagaagacaatgaagacgggggaggcc
ataggcactgacatctcagctgacactacctttcaagatttgctgctgaagcctgaactt
ttaaaagcaatccaagagcgtggttttgaacgtccaacagaagtgcaacgtaaatgcatt
cctcccatcatcagtggtaaagacgtactgtgtgaagtcaaaagtggtacgggtaagagc
actgcgataacattggcaaccctgcagaatttgacaccagaagatggcaagatttccatg
attgttatttgtcattcccgtgcaaaagccaaccaaattgcacaggatgtcagacatttc
accaaatatctgtatacctctccacttaaaatgggagtgttttgtggtggccgcagtgct
aagggtgataagcagaaactgaagcatacctgtccacatattgtgattggaacattgaga
agaacaatgctgttacttcgagataaagctttgaacctgaaggatgtaacacagtttgtt
gtcaatgaatgtgtcccattactagagcagaatgctacaaaacaagacttggaagaaata
tacagaaacacagcccatgaaaagcaagttgtgatgtttagcaggaggctggtagacagg
gtcagacctctatgcaggtggtttttcaagttacaagagtctattgagatgtgcattgat
gttgatgaaccagagacaggatatgtaaccaagaaagcacctgagaaggattcacaggaa
aatatgcctgttgagatgtacattaatgttgatgaactagaaacaggagatgaaaccaag
aaagcgtcggagaaggattcagaggaaaatatggtaaattctgccaaataa
DBGET
integrated database retrieval system
