Amphiura filiformis: 140137571
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Entry
140137571 CDS
T10871
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
afil Amphiura filiformis
Pathway
afil03013
Nucleocytoplasmic transport
afil03015
mRNA surveillance pathway
afil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140137571
09122 Translation
03013 Nucleocytoplasmic transport
140137571
03015 mRNA surveillance pathway
140137571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140137571
03041 Spliceosome [BR:
afil03041
]
140137571
Enzymes [BR:
afil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140137571
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140137571
Spliceosome [BR:
afil03041
]
Complex C
Other components
EJC/TREX
140137571
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140137571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
140137571
NCBI-ProteinID:
XP_072015392
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Position
17:complement(28743608..28757011)
Genome browser
AA seq
433 aa
AA seq
DB search
MADNDAEQDLLDYDEEEQDTAVQEAGGDALSTVAQTQKKEVKGTYVSIHSSGFRDFLLKP
ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPEDGKV
SVLVMCHTRELAFQIAKEYERFSKYMPTIKVGVFFGGISIMKDEKTLKSNCPHIVVGTPG
RTLALLKNKTLNLKNVKHFILDECDKMLEQLDMRRDVQEIFRGTPHEKQVMMFSATLSKE
IRPVCKKFMQDPMEVYVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDLLEFNQVVIFV
RTVQRCMALCKLLVEQNFPAIAIHRNMQQEERLAYYQQFKNFDKRILVATNLFGRGMDIE
RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEGDAKILNDVQDRFEVNIGEL
PDEIDMSTYIEQV
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaacgatgcagagcaagatttgttggactatgacgaagaggagcaggacacg
gcagtccaggaggctggtggagatgcattgtccactgtggcacagacacagaagaaggag
gtcaaaggaacatacgtctctattcacagctctggcttcagggatttcctgttgaaacca
gagcttctcagggccattgtagactgtggttttgaacatccttctgaagtacaacatgaa
tgcattcctcaggccatccttggtatggatgtgctgtgtcaggccaagagtggtatgggt
aaaacagccgtctttgtgctggccactttgcagcagattgaacctgaagatgggaaggtg
tcagtactcgtcatgtgtcacacccgcgagttagccttccagattgccaaagagtacgag
cgtttctccaagtacatgcccaccatcaaagtgggcgtgttctttggcggcatcagcatc
atgaaggacgagaagaccctcaagtccaactgccctcacatcgttgtaggaacccctggc
agaaccttggcgttgctgaagaacaagacccttaacctaaagaatgtgaagcatttcatc
cttgatgagtgcgacaaaatgctggagcagttagatatgagaagggatgtacaggagatc
ttccgtggcacaccgcatgaaaagcaagtgatgatgttcagcgccacactaagcaaggaa
atcagaccagtctgcaaaaagttcatgcaagatcccatggaagtgtacgttgatgacgag
accaaactgaccctgcacggtctgcaacagtactacgtcaagttgaaggacaatgagaag
aacaggaaactctttgatcttctggatttgttggagttcaaccaggtggtgatcttcgta
aggacagtgcagaggtgtatggctctctgtaaattgctggtggaacagaacttccctgcc
attgctatccacagaaacatgcagcaggaagaaagattagcgtattaccagcagtttaag
aattttgacaagcgtatcctggtggccaccaatctctttgggcgtggtatggatatcgag
agagtcaacattgtgttcaactatgacatgccagaagattcagacacatatctgcacaga
gttgcaagagcaggtcgttttggtaccaaaggtttggctgtgacatttgtgtcagacgag
ggagatgccaagattcttaatgatgtgcaagaccgctttgaggtcaacattggagagtta
cctgatgaaattgatatgtccacatacattgagcaagtctga
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