Amphiura filiformis: 140137746
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Entry
140137746 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
afil Amphiura filiformis
Pathway
afil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140137746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140137746
Enzymes [BR:
afil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140137746
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
140137746
mRNA degradation factors
3'-5' decay
Ski complex
140137746
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
UCP031279
Motif
Other DBs
NCBI-GeneID:
140137746
NCBI-ProteinID:
XP_072015613
LinkDB
All DBs
Position
17:complement(37703248..37756178)
Genome browser
AA seq
1285 aa
AA seq
DB search
MASEFESLEQSKFDLPTDDDELNFNLLQLGCSDQIAIVPKQTGSNATHISTLPGGLPPVL
QDFQTRTESYLTCPEKLPIHHVEKAQRFIPRKTNPSSLYSISSCPLQSTLQVERDPTTGE
LLGFKEVRLEDTGSTAKNSLSLRRQPGPPSEAVRGNSTNYPFWPGGIDEPTLEVMQAKVE
GEIEMDFENDLLTTPPGFETGMTFEPKSEEKGVGEQALATTPVNDIITDVKTLKLTDIML
GDDDLVFDDEEEEEERAKEVETQLKENTNQKSEKEESETSNLTRSDSLEKLLPPKKDTVI
ETKNVPTLKPSADEPKEEWSVRVDISXPVDDFHXKVPVPAHKWPFELDVFQKQAVLHLEN
HESVFVAAHTSAGKTVVAEYAIALSLRHLTRTVYTSPIKALSNQKFRDFRQTFSDVGLLT
GDVQIKPEASCLIMTTEILRSMLYNGSDVIRDLEWVIFDEVHYINDSERGVVWEEVLIML
PEHVKIILLSATVPNTMQFAGWVGRIKQKKIYVISTLKRPVPLEHYLYTGNSNKTSNELF
MIVDAKKQFLQRGYNKAIDAKKGRETKVTSGYGAKGPRGGGFKSDKPVYLSVIEMLRKKD
QLPVVVFTFSKKRCDDNASSLSSLDLTTSSEKSEIHVFVRKCLERLKVADRGLPQVLTMS
ELLKRGIAVHHSGILPILKEVVEMLFQRGLVKLLFATETFAMGVNMPARTVMFDSISKHD
GTQRRTLLPGEYIQMAGRAGRRGLDTTGMVIILCKGDVPEMSELHKMMLGTPTLLESQFR
LTYTMILNLLRVEELRVEDMMKRSFSESKTRKDADTHRENMRAASKKLREFKDLQCFMCL
ADLESYYHTCREMQTLKKDLQRVIASHPTGVKILSTGRVIIVQTQNHKNALGVILSSSTA
SKERTFKTLVICDKDATSQNDGRSRGCEKSSSNSPHVQPIIKEKLFNPEGACGQAVLDLK
GTDIEAISTQTIKVAAEKIADDVKKRQIPRFRNDPPGQSTSIATQELLRLTEANPDGLDK
IDPVSDLHLRDIDLVEKFQRLSSLESLVGQFSCLTCANFQDHFAYHCQKMKLKEDLDHFK
FLLSDSSLELLPEYHQRIQVLRELRHIDSSNAIQLKGRVACEINNHELVITELVFQNILS
PLPPAEIAALLSCMVFQEKRCAEPELTESLKEGVSRIKAEATRIGEIQREKGMDMPVEDF
VEQFRFGLTQVVYEWARGMPFIDITQLTDVSEGNIVRTIQRLDETCRDVRNAARIIGDPT
LFQKMEDTSQAIKRDIVFAASLYTQ
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgaatttgaaagtctagagcagtcaaaatttgatctgcctactgatgatgat
gaattgaacttcaacctgctgcagttaggatgcagtgaccaaatagcgatagtcccaaag
cagactggatcaaatgccacacatatttcaactcttcctggtggcttgcctccagttctt
caggattttcaaacgaggactgaaagctacttgacttgcccagaaaaattaccaattcac
catgtggaaaaggcacagaggtttatacctcgtaagaccaacccatccagcctgtacagc
atatcatcatgccctctacagagcacattacaggtggaaagggatcctactacaggggaa
ctacttggattcaaagaggtgaggctggaggatacaggttctaccgctaagaactcattg
tctttaaggcgtcaaccaggacccccaagtgaagcagttagaggcaattctactaactat
ccattctggccaggaggaatagatgagccaacgttagaagtgatgcaagcaaaagtggaa
ggcgagattgagatggattttgaaaatgatcttttaaccacacccccaggttttgaaact
ggtatgacctttgaacccaaatctgaagagaaaggagtcggtgaacaagccttggcaact
acaccggtgaatgacatcattacagatgttaaaactttgaaattaactgatatcatgctt
ggtgatgatgacctggtgtttgatgacgaggaggaggaggaagagagggcaaaggaggtg
gaaacacaactcaaggaaaatacaaatcagaaatcagagaaagaagagagtgaaacatca
aacctgacacggtctgacagcttagaaaaactactgccacctaagaaagacacagtaatt
gaaaccaagaatgtgcctacactaaaacccagtgcagatgaacccaaggaggaatggtct
gttagagtagatatctctnagccggtagatgatttccatnaaaaagtccctgttccagct
cacaagtggccctttgagttggatgtgttccagaagcaagcagttcttcatctagagaac
catgagagtgtctttgtagcagctcacacatcagctggcaaaacagttgtagctgaatat
gctatagctttgtctcttagacatttaacaaggactgtctacacatctcctatcaaagcc
ttatccaatcaaaaatttcgtgattttcgtcagaccttcagcgacgtaggtttgctgacc
ggtgatgtccagatcaaaccggaagcatcttgtttaatcatgacgacagagattctacgt
tccatgttgtataatggctctgatgtcatcagggatctggagtgggttatatttgatgaa
gtacattatatcaatgattcagagagaggagttgtatgggaagaggttctcatcatgcta
ccagaacacgtcaaaatcatcttactgagtgcaactgtaccaaatactatgcagtttgct
ggatgggttgggcggatcaagcagaagaaaatttatgtgatcagtacactaaagcgtcct
gtgcctttagaacactacttatacactggaaatagtaacaagactagcaatgaactgttt
atgattgtagatgcgaaaaagcagttcttgcaaagaggatacaacaaagctattgatgcc
aagaaaggaagagaaacaaaggtaacatctgggtatggagctaagggcccacgtggaggt
ggcttcaaatcagacaagccagtgtacctgtcagtaattgagatgctgcgtaagaaagat
caactcccagtggtggtgtttacattctccaagaagcgatgtgacgacaacgcctcgtct
cttagtagtcttgatttgacgacaagtagtgagaagagcgaaatccatgtgtttgttagg
aaatgtctggagaggttaaaagttgctgatagaggattaccacaggttttgacaatgtca
gagctactgaaaagaggcatagcagttcatcacagtggcatccttcccattctgaaagaa
gttgtggaaatgttattccagagaggcttagtcaagctattattcgccacagagacgttt
gcaatgggtgtcaacatgccagcacgtaccgtgatgtttgatagtatctcaaagcacgat
gggacacaaaggcgtaccctgttaccgggagaatacattcagatggctggtagagcagga
cgtagaggtttggatacgactggaatggtgatcatactgtgtaaaggagatgtgccagaa
atgtcagaactacataaaatgatgttgggcacaccaacactgctagaatcccagttccgt
ctaacctacaccatgatactcaacctcctccgagtggaagaattgcgggtagaagacatg
atgaagagaagcttttccgagtcaaagaccaggaaagatgcagacacccaccgggagaat
atgagagctgcatccaagaagttgagagaattcaaggacctgcaatgttttatgtgccta
gctgacttggagagttattatcatacctgtagagagatgcagaccctcaagaaagattta
caaagagtgattgcctcacatccaactggtgtcaagatcttgtcaacaggtcgtgtcatc
atagtccaaacacaaaaccacaaaaatgctttaggtgtcattcttagctcatcaaccgct
agtaaagaaaggacgtttaaaactcttgttatctgtgataaggatgcaacatctcaaaat
gatggcagaagtcgtgggtgtgaaaagagcagtagtaatagtcctcatgtacagccgatt
attaaagagaagttgtttaatccagagggtgcttgtgggcaagcggttttggatttgaaa
ggcacagatattgaagctatcagtactcaaacaatcaaagtggcagctgagaagattgcg
gatgatgtgaagaagagacagataccaaggtttagaaatgatcctccaggccaatccacc
agcatagccactcaggaattactacgtctcacagaggccaacccagatggtttggataag
attgaccctgttagtgatctccacttacgagacattgatctggtagagaagttccaacgg
ttaagcagtctggagtcacttgtgggccagtttagttgtctaacctgtgccaactttcag
gaccattttgcataccattgccaaaagatgaaactgaaggaggatttggaccatttcaag
tttcttttatcagattcaagtctagaattactaccagagtatcaccaaaggatacaggtt
ctcagagaattacgacacatagacagcagcaacgccattcagttgaaaggtcgagttgct
tgtgagatcaataatcatgaactagtgataacagaattagtcttccagaacatcctgtca
ccgcttccaccggcagagatagctgcgttgttgtcatgtatggtgtttcaagagaaacgg
tgtgctgaaccagaactcacagagtcacttaaagagggggtatcaagaatcaaagcagag
gcaaccagaataggtgaaattcagagagagaaaggcatggatatgccggtagaagacttt
gtagagcagttcagatttggattgacccaagtagtctatgaatgggctagaggaatgccg
ttcattgatatcacccagctgactgacgtatcagagggaaacatagtgagaacgattcag
agattagatgagacgtgtcgtgatgtgcggaatgccgcccgcatcattggagatccaact
ctctttcagaagatggaagatacatcccaagccatcaaaagagacattgtgtttgctgct
agtctgtatactcagtga
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