Amphiura filiformis: 140137755
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Entry
140137755 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
afil Amphiura filiformis
Pathway
afil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140137755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140137755
03012 Translation factors [BR:
afil03012
]
140137755
Enzymes [BR:
afil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140137755
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
140137755
Translation factors [BR:
afil03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
140137755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
nSTAND3
ATPase
Cas3-like_C_2
PhoH
ABC_tran
AAA_19
AAA_23
AAA_22
Motif
Other DBs
NCBI-GeneID:
140137755
NCBI-ProteinID:
XP_072015621
LinkDB
All DBs
Position
17:38100573..38133806
Genome browser
AA seq
1020 aa
AA seq
DB search
MYVALRRLQACNRLYPRTTQTMSSSYNSYQGHGSGHQGHGSGHQGHGSGHQGHGSGYGSR
RGRRGGRGGGRGHGGGRGGGRGGPPAGLKGRDIGMWYAARSKQRKKEEEKHNRPVVTMDA
NQEDNIARILDDVRHLQPIGGDSQHRQRASISKQDAECRSFYIHPLNQDTLLDQQLLEEH
ESKSSNHQYAKMMEFRKKLPSYKMRQELLDLIHKNQVVVISGETGCGKTTQVPQFILDDF
ITSSKGSLCRAICTQPRRISAISVAERVAVERAENCGQNQSAGFQIRLEAKLPRRQGCIL
YCTNGILLKWLESDPLLTSVSHVVLDEVHERDIMSDFLLIILKDVLPKRPDLKIILMSAT
LNAEQFSQFFGGCPMVNIPGYTFPVKEYWLEDVLQITKYQPREQYQKKVPPWLKHRKKRE
QRLEEEREMEEYNEKFKEYITAMEETYSPDVIQSLSTMDHEAMDLDLMACLIRYIHLHKP
EGAILVFVPGWDQISKLHDKLSGDNMFSSHNSLIIPLHSMMPTVNQRQVFERPPQGVRKI
VIATNIAETSITIDDVVYVVDIGRVKERNFDVKNNISTLKPEWCSNAACRQRRGRSGRVQ
PGECYHMFSQLRASLMADYQQPEMLRTPLDELCLNIKSLKLGRIVPFISKALQCPSLDAV
KLAITSLQQLNALDENEELTSLGYHLARLPVEPRIGKMILFGAMFCCLDPILTIAASLSF
KDPFIIPLGKEKIADARRKDLARGCLSDHLMLVNAVWGWEDKSEGRAAENDYCWHNFMSG
NTLKMLDNMKGQFYELLYNIGFLHNKSCKQPQANRNSENEQLIKAVLCAGLYPNIAEIKE
GRYSWKKKMKRPAKFRTPSDGNVKVHPKSVNCDGKEFNGNRWMLYHLKLKSTGIFLHDTS
IVEPYPLLFFGGKLQSCDEDGMNVITMDGLVKFHAPARIAQLVQELRHQMEQLLEHKITH
PGITNWQHNSREGKIMTAIVDLFTMDGQRQQEQNWRESAGYRAQEEEEESEEEEDDDDGR
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtagcactgcggcggctacaggcttgtaaccgtctatatccaagaactacacaa
acaatgtcctcatcctacaatagctaccaaggtcatggttcaggtcatcaaggtcatggg
tcaggtcatcaaggtcatgggtcaggtcatcaaggtcatgggtcaggttatggttcaaga
agagggaggagaggtggcagaggcggaggcagaggtcatggaggaggaagaggtggaggc
agagggggacctccggcaggcttaaaaggtcgagacattgggatgtggtatgcagcacgc
agcaaacagaggaagaaggaggaggaaaaacacaataggccagtggttaccatggatgca
aaccaagaggacaatatagcccgcatcctggatgatgtaagacatctgcaaccaattgga
ggggatagtcaacacaggcaaagagcaagtatcagcaagcaggatgcagaatgccgttca
ttttacattcatccactgaaccaagatacactacttgatcagcaactactggaggaacat
gagtctaaatcatcaaatcatcagtatgccaaaatgatggagtttaggaagaagttacca
tcatataaaatgagacaggaattattagatttgatacataagaatcaggtggtggtcatc
agtggagagacaggctgcggcaagacaactcaggtacctcagttcatcctggatgatttc
ataaccagcagcaagggatcactatgtcgtgcaatatgtacacagcctcgcagaatcagt
gcaatatcagtggcagaaagagttgcagtagagagagcagagaattgtgggcaaaatcag
agtgcaggcttccagatcagactagaagccaagttgccacggagacagggttgtatcctg
tattgcaccaatggaatcctacttaaatggctggaatcagatccgctcctaacatctgtc
agccatgtcgttctagatgaggtacatgaaagagatatcatgtctgattttctacttatt
attctcaaggacgtcttaccaaaaagacctgacttgaagataattttgatgagcgccaca
ctaaatgctgagcaattctcacagttctttggtggttgtccaatggtcaacattccaggc
tatacattccctgtgaaggaatactggctagaagatgtccttcaaatcactaaatatcag
cccagagaacagtatcagaagaaggttcctccttggttgaaacacagaaaaaaacgagag
cagagattggaagaggagagagaaatggaagagtacaatgagaaattcaaggagtacatc
actgctatggaggaaacgtactctcctgatgtgattcaatctctgtctaccatggaccat
gaagcaatggatttagatttgatggcttgtcttatcagatatatacacttacacaaacct
gaaggtgctattctagtctttgtacctggctgggatcagattagtaaactacatgataaa
ctgtcaggagacaacatgttcagtagtcataattcacttatcataccgctacattccatg
atgccaacagttaaccaaagacaggtttttgaacggccaccacaaggggtacgcaaaata
gtgattgccactaacatagcagagaccagtatcaccatagatgatgtagtatatgtagta
gacataggccgtgtcaaggagcggaattttgatgtaaagaacaacatcagtacattgaag
cctgagtggtgtagtaatgctgcttgccgtcaaagaagaggtcgatcaggaagagtacaa
cctggagagtgttaccacatgttcagtcaattaagagcatccctaatggcagattaccag
cagcctgagatgctcagaacaccactggatgaactttgtcttaatatcaagagtctcaag
ctaggtcgcattgtgccattcatcagcaaagccttgcagtgtccatccttggatgctgtc
aaactagccatcactagcctgcagcaattgaatgcgctggatgagaatgaggagctgacg
tccttgggataccatctggctcgcttaccggtagagcctcgtatcggcaagatgattctc
tttggtgctatgttctgctgtctggatcccatactgactatcgcagcaagtctgagcttc
aaggatccatttattataccactgggaaaggagaaaatagcagatgcgcggaggaaggat
ctggccaggggttgtcttagtgaccatctgatgctggtcaatgctgtgtggggatgggag
gataaaagtgagggacgggctgcagaaaatgactactgctggcataactttatgtctggt
aacacactcaagatgcttgataatatgaaaggtcaattttatgaattgctgtacaacata
gggtttttgcacaacaagtcctgtaaacaaccacaagccaacagaaactcagaaaatgag
cagttgatcaaggctgttttatgtgcaggactttatccaaacattgctgagatcaaagaa
ggtagatacagttggaagaagaaaatgaaaagacctgccaaattccgcacccctagtgat
ggcaacgtgaaagtccaccctaaatcagtgaactgtgatggtaaggaattcaatggaaac
agatggatgctgtatcatctgaaactcaaatcaacagggatcttccttcatgacacatca
atagtagagccatatcccttgctgttctttggaggcaagctacagagttgtgatgaagat
ggcatgaatgtgatcactatggatggattagtcaaattccatgcacctgctagaatagca
caactagtacaggaattgagacatcaaatggagcaattactggagcacaaaatcacccac
cctggcattactaactggcaacacaactcaagggaaggcaagattatgacagccattgta
gatttgttcaccatggatggacagagacaacaggaacagaactggagggaaagtgccgga
taccgtgctcaggaagaagaggaggagagtgaggaagaagaagatgatgatgatggcaga
tga
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