Amphiura filiformis: 140137840
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Entry
140137840 CDS
T10871
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
afil Amphiura filiformis
Pathway
afil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140137840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afil03041
]
140137840
Spliceosome [BR:
afil03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
140137840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
PRP4
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Ge1_WD40
Beta-prop_WDR19_1st
eIF2A
Beta-prop_SCAP
Beta-prop_SPT8
WD40_like
WD_LRWD1
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
Beta-prop_DCAF12
tRNA-synt_1_2
Nbas_N
Motif
Other DBs
NCBI-GeneID:
140137840
NCBI-ProteinID:
XP_072015731
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Position
17:complement(43331492..43360992)
Genome browser
AA seq
497 aa
AA seq
DB search
MSDDDDYPAVKRQKKLHYGGLDERLRQESSSSKDAITMGVDAGNINMSSGDTFDLEEHVS
EQRKELLAEFERRKKIRQITVSTDDAEVKAQLRSYGEPICLFGEGPADRRNRLRQLIAEV
GEQNLKQKKEEKQKKGDENTTWYHEGPVSLKRARLWIAEYSLPRAEKRLEGAREAKLIPE
SQQNAKRQELSRHMRSLSAIGSQIGDTRPISYCQFSPDSKMLATASWSGLIKLWSVPEFH
AIKTLRGHNNNVGCIAFHPQATKSLDPSECSIATCAADGSVKLWNLESEEPIANIEGHDA
RVPRVAYHPSGRFLGTTCFDNSWRLWDLEAQEEILHQEGHSKAVYCIDFQSDGSLCATGG
MDAFGRVWDLRTGRCIMFMEGHLKSVLAVNWSPNGYHIATGSEDNSVKIWDLRQRACVYT
IPAHNNLVSGVKFQGSGDVLVTCSYDNTAKVWAHPGWAPVMTLAGHDGKVMGVDISPDEK
HIATASFDRTFKLWAPE
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgacgatgattacccagcagtgaaacgtcaaaagaagctgcactatggagga
cttgatgagagactgagacaagaaagtagctctagcaaagatgctattaccatgggtgtg
gatgcgggaaatatcaacatgtcatcaggagacacatttgacttggaagaacatgtgagt
gagcagaggaaagaactcttagctgaatttgagagacgaaaaaagattcgtcaaataaca
gtgtcaactgatgatgcagaggtcaaagcacaacttagatcatatggagaaccaatatgt
ctgtttggtgaagggccagctgacagaaggaacagattaagacaactgatagcagaggtt
ggagaacaaaatttaaaacaaaagaaagaagaaaaacagaagaaaggggatgagaacaca
acatggtaccatgaaggaccagtgagtctgaagagggctagattgtggattgcagagtat
tcactgcccagggctgagaagaggttagagggagcaagggaagccaaattaatccctgaa
tcacagcaaaatgccaagagacaggaattaagtagacacatgaggtcgctatctgccata
ggaagtcagataggagataccaggcctatttcatattgccagttcagtccagactcaaaa
atgctagccactgcatcatggagtgggttaataaaattatggtcagtaccagaatttcat
gcaataaagacattaagaggtcataataacaatgtaggctgcatagcattccatccacaa
gcaaccaaatctctagatccatcagagtgtagtatagctacatgtgctgcagatggctcc
gttaaactgtggaatctagaaagtgaggaaccaatagctaacatagaaggtcatgatgcc
agggtacccagggtcgcgtatcatccatcgggcagatttcttggtacaacatgttttgat
aattcctggcgattatgggatcttgaagctcaagaggaaatcttacatcaagagggccat
agcaaagctgtctactgcattgacttccagtctgatggctcattatgtgctactgggggt
atggatgcgtttggtagagtgtgggacctgagaacagggcgatgcatcatgtttatggag
ggtcatcttaagtcagtacttgcagtcaactggtcaccaaatggttatcatattgctacg
ggaagtgaggataactctgtgaagatctgggatttaagacaacgtgcatgtgtgtacacc
ataccagctcataataacctagtatcaggggtcaaatttcaaggttctggtgatgtttta
gttacatgctcctatgacaacactgctaaggtatgggctcatcctggctgggcaccagtg
atgacgcttgcagggcatgatgggaaggttatgggggtagatatatcaccggatgagaaa
cacatagcaacagcatcatttgacaggacatttaagttgtgggctcctgaatga
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