Amphiura filiformis: 140139786
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Entry
140139786 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
afil Amphiura filiformis
Pathway
afil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140139786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afil03041
]
140139786
Enzymes [BR:
afil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140139786
Spliceosome [BR:
afil03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140139786
Complex C
U4/U6.U5 tri-SnRNP related factors
140139786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
PWI
SRP54
T2SSE
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
140139786
NCBI-ProteinID:
XP_072017598
LinkDB
All DBs
Position
18:5349332..5392274
Genome browser
AA seq
1045 aa
AA seq
DB search
MSTTRDVEIWVQDQLHDILGISDKYIAEYIIGLAGKSSSGSDLVQRIEKTGTVDINAAIS
GFADELMHKIPKKQVREKPARAKEREAIEREKQYQSYKLVSDGEEEEELPTVSKSKDRKK
DKSAKRKHIRQKRDESSDSEPEPVISKRNRRKESSSSSASEEEDEKERRKDLEERDAFAE
RLKGRDKEKTKXVTEKGNKKAYEEARKRLEMAEQDRRKMIPDLRKGSRREYLKKREVDKL
EELEADIADDEYLFSSAELTKREKKDLDYKKTVLDLAKRHKKAGEVETEGRYYIPKEDEK
PSDKYVEPIEEELGPNSEQKRWEEEHVRQGSMHFGARDAKKKHKEKEYELVVDELGEIEF
VNAMQMPGSGRGDDDDDTPQISQAERKRMSIKETRRSLPIYPFREDLLQAIEEHQILIIE
GETGSGKTTQIAQYLIEAGFTKGKDGTTLKIGCTQPRRVAAMSVAARVAEEMGVKLGNEV
GYSIRFEDCTSERTILKYMTDGMLLREFLGEPDMSSYKVLIVDEAHERTLHTDILFGLVK
DIARFRPDLKLLISSATLDTEKFSAFFDEAPIFRIPGRRFPVDIFYTKAPEADYLDACVV
SVLQMHLTQPLGDILVFLTGQEEIETCQEMLQERTRKLGSKIRELLVLPIYANLPSEMQA
KIFEPAPPNGRKVILATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLVVTPISRA
SANQRAGRAGRVAAGKCFRLYTAWAFKNELEDDSIPEIQRTNLGNVVLLLKSLXINDLIH
FDFMDPPPHETLVLALEQLYALGALNCKGELTKLGRRMAEFPVDPMLSKMILASEKYQCS
EEILTITAMLSVNNSIFYRPKDKIVHADNARVNFFVPGGDHLTLMNVYNQWVETDHSTQW
CFENFIQHRSMRELAMSRDQLVGLMERVEIKLTSNPMDTVQIRKAVTAGFFYHTAKFGKG
GQYKTVKHQQTVMVHPNSCLFEEQPKWIIYHELVFTTKEFMRQVIEIENSWLLEVAPHYY
KAKELEDGSKRKMPKNTGKSKDELR
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccacacgtgatgttgagatttgggttcaagatcagctccatgatatcctgggg
atcagtgacaaatacatcgcggaatatatcatcggtttggcgggcaaatcgagcagtgga
tcggatctggtgcagaggattgaaaagacggggacagtggatatcaacgctgccatcagt
ggatttgcagatgaattgatgcataaaattcccaagaagcaggtgcgtgagaaaccagcc
cgtgccaaggagcgtgaggcaatagaacgggagaaacaatatcaaagttataagttggta
tctgatggtgaagaagaagaagaactaccaactgtgtccaaatcaaaggatcgtaaaaaa
gacaaaagtgcaaaaaggaaacacatacgacaaaagagggatgaaagtagtgacagcgag
ccagaaccagtcatcagcaaaagaaacagaagaaaggaatcatcttcatcatctgcatcg
gaggaggaggatgagaaagagaggaggaaggatctggaagagagagatgcttttgctgag
cggttgaagggcagagataaggaaaaaactaaanatgtcacggagaaagggaataaaaag
gcatatgaagaagccaggaagcggttggaaatggcagaacaagaccgcagaaaaatgatc
ccagacctgaggaaaggttcacgcagagagtacctgaagaaacgagaggttgataaactg
gaagaactcgaggctgacattgcagatgatgaatacttgttttcatctgcagagctaaca
aaacgcgagaagaaggatctcgattacaagaagacagtattggatttagccaagagacac
aagaaggctggtgaagttgagacagaaggccggtattatataccaaaggaagacgagaaa
ccatcggacaaatatgtggagccaatagaagaggaattaggaccaaactctgagcagaaa
agatgggaggaggagcatgtcaggcaggggtcaatgcactttggtgcacgagatgctaag
aagaaacacaaggaaaaagaatatgaattggttgtagacgaactgggagagatagagttt
gtcaatgctatgcagatgcctggaagtggcagaggagatgatgatgacgacacaccacaa
atctcacaagcagagaggaagagaatgtccatcaaggagacgaggagaagtcttcctatc
tatccattcagagaggacctactgcaagccattgaggaacaccaaatacttatcatagaa
ggagaaacagggtcagggaagacaacacagatagctcaatatctgattgaagcaggtttt
accaaaggaaaagatggtaccacactgaagattggttgtacacagccaagaagagtggct
gctatgagtgtggctgctagggtcgctgaagagatgggagtcaaattgggcaatgaggtt
ggatacagtattcggtttgaagactgcacatctgagaggaccatactgaaatatatgaca
gatggtatgctattgagggaattcctgggtgaacctgatatgtcaagttacaaggtgcta
atagtagatgaagctcatgaaagaacactgcatacagacattctgtttggcctagtcaag
gatattgctagattcagaccagacctcaaacttctgatttcaagtgcaacattggacaca
gagaaattctcggcgttttttgatgaagcaccaatattcagaataccaggaagaagattc
cctgtggatatattctacacaaaggcacctgaagcagactatctggatgcatgtgtagtg
tctgtcctgcagatgcacctgacacaaccactgggtgatattctggtcttcctgactggg
caagaagaaattgaaacctgccaagaaatgttgcaggaaagaaccagaaaactcggcagc
aagatccgtgagctacttgtgcttcccatctatgccaacctcccctctgagatgcaggca
aaaatctttgaaccagcgccacccaacggtcgtaaagttatccttgccaccaacattgcg
gagacatcgctaaccattgatggaattatttacgtcattgatccagggttctgcaagcag
aagagttacaatgcaagaactggaatggagtcactggttgttactccaatatcaagggca
tctgctaatcaaagagctgggcgagcaggtcgtgtggcagcaggtaaatgttttcgtctc
tatacagcatgggctttcaagaatgaactggaggatgattctataccagagatccaaaga
acaaatctaggaaatgttgttctactcttaaaaagtctcngaatcaacgatcttatccac
tttgatttcatggacccaccgcctcatgagacacttgtcctagcgcttgaacaactgtat
gcgttgggggcgcttaactgcaaaggtgaactgacaaagctgggacgaaggatggctgag
ttccctgtggacccgatgttgtcaaaaatgatactagcttcagaaaagtaccagtgctct
gaagagatattgaccatcactgctatgctctcagttaacaattccatcttctaccgacct
aaagacaagattgtccatgcagacaatgctagagtcaatttctttgtaccagggggtgat
catcttacactcatgaatgtctataatcagtgggttgaaacagatcattccacacagtgg
tgctttgagaacttcatccagcatcgatctatgcgcgagctcgcgatgtcacgtgatcag
cttgtgggtctgatggagagagttgagattaagttgacttcaaaccccatggatacagtg
caaatcaggaaggctgtcacagcaggattcttctatcacacagccaaatttggtaaaggt
gggcagtacaagacagtgaagcatcagcagaccgttatggtccaccctaatagctgcctg
tttgaggagcagcctaaatggattatctaccatgagctggtattcactaccaaagaattc
atgagacaggtcatcgaaatagaaaactcatggctcctggaggttgcccctcattactac
aaggcaaaagaactcgaagatgggtctaagagaaaaatgcctaagaacactggcaaatcc
aaggatgaattgagatga
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integrated database retrieval system
