Amphiura filiformis: 140143478
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Entry
140143478 CDS
T10871
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like
KO
K15542
polyadenylation factor subunit 2
Organism
afil Amphiura filiformis
Pathway
afil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140143478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140143478
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
140143478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML
WD40_Gbeta
WDR55
Beta-prop_IFT140_1st
EIF3I
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR19_1st
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
eIF2A
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
Beta-prop_WDR41
Beta-prop_DCAF12
Beta-prop_SPT8
WD40_like
WD_LRWD1
PROPPIN
WDCP
Motif
Other DBs
NCBI-GeneID:
140143478
NCBI-ProteinID:
XP_072021412
LinkDB
All DBs
Position
Unknown
AA seq
889 aa
AA seq
DB search
MEGGSGGAPGGGAGGSGQGFFHRPRLPYYQKTQVYKHHHYLNRQSHGDGQPSNATNFDGK
RMRKSVSRKTVDYNGTVLRLLERRIWQRDQRDQRWMQPDMSYLHEMGPPSSMKHNPINAV
ATKFVRMSTNKVRCPIFCAVWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDYPVRT
MTWSHNDLWLLTADHLGYVKYWQSNMNNVKMYQAHKDNPIRGASFCPTDSKFATCSDDGT
VRIYDFLRCHEERIMRGHGADVRAVDWHPQKGLVVSGSKDNQQPIKLWDPRTGNSLATLH
AHKNTVMGLKWNQNGNWLLTASRDHLCKLFDIRTMKEMYVFRGHKKEATAISWHPIHEDL
FVSGGSDGSLLFWQIGNDKEVGAIESAHDSIVWSLAWHPLGHILCSGSNDHSIKFWARNR
PGDRMRDRYNLNTLPIGTAEEMLEYDDDASAGPVVPGLGLEFGLPEHLKKEDEEEMEGLD
TSIPGLDSSAEELARLKPQPQRKVPYAKPIPDEFQKAWDKLKAPGIAPQGAKGGPPHMNN
KAPHERPPNDQRHHPPGQPPQAGMPHMEQRGPPHGPPQGPSHGPPPHEQQRGPPGRPQGP
PHGPPPDAHHRPQQGPPQGQLPDPHHRPQQGGPHGHPPDPHRRPEEGPPHGQPPDPHHRQ
GPPHGQPSDTQHGQGPPPHGQGPPPRGQGPPPHGQPPRHPGPGMQNPRMPGGPGMRGPRP
VLLGQPSEPHMPGNQPRPPHPRSEQEPPPPRNKGPPSLMSLNLDTPNREQSPADEDFRQG
PPVDPAEGQDVDLRKQFGGGGGGDVDLRNRFRDQDHRNPQFPPGHREDNGRFSEDEDFRH
QRSRDSPSGGPLHGDRMVVLILLWPAIQIYASSNMEDHLGESNLPWIRT
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtggaagtggtggcgctcctggaggcggtgctggtggtagcgggcaaggattc
tttcatcgcccaaggctgccttactaccagaaaacacaggtgtacaagcatcaccattac
ttgaacagacagtcccacggtgatggccaaccatccaacgccaccaactttgatggcaag
cgtatgcgcaagtctgtcagcaggaagacggtggattataatggaactgttctgcgcttg
ctagagaggcgtatttggcagagggaccagcgagaccagaggtggatgcaaccggacatg
tcctacttgcacgagatgggaccaccctcgtctatgaaacacaatcccatcaatgcggtg
gctaccaagtttgtgagaatgtcgacgaataaggttcgatgcccaatcttctgtgcagtg
tggacacctgaaggcaggcgtcttgtgacaggagcttccagcggggagttcaccctgtgg
aatgggcttacattcaactttgaaactattttacaggcgcatgactatcctgtacggacg
atgacgtggagccacaacgacctctggctgctgacggccgaccacctgggctacgtcaag
tactggcagtccaacatgaacaacgtgaagatgtaccaagcacacaaggacaaccctatc
aggggagcaagtttctgtccgacggactccaagtttgcaacatgctccgacgacggaacg
gtgcgcatctacgacttcctgagatgccatgaagaaagaataatgagaggtcacggtgca
gacgtcagagcggttgactggcacccacagaaaggcctcgtagtctcaggtagcaaagac
aaccagcaacccatcaagctatgggatccccgcaccggcaactcgttggcaacactgcat
gcgcacaagaacacagtgatgggcttgaaatggaatcagaacggcaactggttgttgacg
gcatctagggatcatctgtgtaaattatttgatatcaggacaatgaaggagatgtacgta
ttcaggggccataagaaagaggcaacagcaatctcctggcatcctatccatgaggatctg
tttgtaagcggtgggtctgatggctcacttctcttctggcaaatcggcaatgacaaggag
gttggagccattgagtcagctcatgacagtattgtgtggagtctagcatggcatccgctg
ggtcatatactatgctcaggctctaatgatcattctatcaaattttgggcacgaaataga
cctggtgacagaatgagagacagatacaacttgaacacactacctatcggtactgcagag
gaaatgttggaatatgatgatgatgcttcagctggaccagtagtgccaggtttgggatta
gagtttggtctccctgaacatctcaagaaagaagatgaagaagaaatggaaggacttgat
acctccatcccaggtttggattcctcggcagaagagcttgcacgtctcaagccacaacca
caacgtaaagtcccctatgccaaacccattccagatgaattccagaaagcgtgggacaaa
ttaaaggcacctggtatcgcaccacagggagcaaaaggtggtccacctcatatgaacaat
aaggcaccacatgagagaccaccaaatgaccaacgccatcatccacctggccaacctcct
caagctggtatgccacacatggaacagagagggccacctcatgggccgcctcaaggacca
tcacatgggccaccaccacatgaacaacaaagagggccccctggtagaccacaaggccct
cctcatggaccgcctcccgatgcacatcacagaccgcaacaagggcctccgcaaggacag
ctacctgacccacaccacaggccacaacaagggggtccgcatggacatccacctgatccg
catcgaagaccagaagaaggtcctcctcatgggcagccgcctgatccacaccatagacaa
gggcctccacatggacagccatctgacacacaacatggtcaaggacctccacctcatggt
caaggaccaccacctcgtggtcaaggacctccacctcatggtcagcctccaaggcatcca
gggccaggtatgcaaaatccaagaatgccaggtggccctggtatgcggggtccccgacct
gtgcttcttggccagccatctgaaccacatatgcctggaaaccaacccaggcctcctcat
ccacggtcagaacaagagccaccaccgccacgcaacaaaggtcccccatcattaatgtcc
cttaatctagacacaccaaatagagaacaatcgccagctgatgaggatttcagacaaggt
cctccagttgatcctgctgagggacaagatgttgatcttagaaaacaatttgggggtggc
ggtggtggtgatgtggatctcaggaatagattccgagatcaagatcacagaaatccacag
tttccaccaggacatagagaggataatggcaggttttcagaggatgaagatttcagacac
caaagatcgagagacagtccatcaggtggccccctgcacggggaccgaatggtggttttg
atccttttatggccggcgatacagatttacgccagcagcaacatggaggaccacctggga
gagagcaatctcccatggatcaggacatga
DBGET
integrated database retrieval system
