KEGG   Amphiura filiformis: 140143591
Entry
140143591         CDS       T10871                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
afil  Amphiura filiformis
Pathway
afil03030  DNA replication
afil03410  Base excision repair
afil03420  Nucleotide excision repair
afil03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:afil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    140143591
   03410 Base excision repair
    140143591
   03420 Nucleotide excision repair
    140143591
   03430 Mismatch repair
    140143591
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:afil03032]
    140143591
   03400 DNA repair and recombination proteins [BR:afil03400]
    140143591
Enzymes [BR:afil01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     140143591
    6.5.1.6  DNA ligase (ATP or NAD+)
     140143591
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     140143591
DNA replication proteins [BR:afil03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    140143591
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     140143591
DNA repair and recombination proteins [BR:afil03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     140143591
   NER (nucleotide excision repair)
    Other NER factors
     140143591
   MMR (mismatch excision repair)
    Other MMR factors
     140143591
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 140143591
NCBI-ProteinID: XP_072021505
LinkDB
Position
Unknown
AA seq 967 aa
MAQRSIMTFFSPKPAEKKKKKKDKKTVNGLERSPLKTKNDCTESPKSDQTRKKSRRILDS
DDEEEENATSQQSPSQQNGEKETPEKKKDKKKKEEDMEVDESEDKSDKGKTPTKPDGSQP
STSSPETTSPSGIPKRTTARKHMRKRKPDEIQSPTSEKESGHDAKKMKTEDKSADEKEDK
MDTDETPKKGSSKIKEVETKVKEEEKSPKEKKEKEKKKESSKGKKESPKRKVKTPDTEKD
KKKEKTPDTKKERKDKKKETKEKAESPKWKKEVKEEKKEEKDKEEKKEEKKEPESKPKKT
GFSFAQMGKATESSYQPGTSSYHPINDACWKKGEKVPYLALARTLECIEEISSRLKIMEI
LTDFLRSVIVLSPDDLQRCVYLCLNKLAPAYEGMELGMGETHLMKAVSQATGRSMEKIKA
DVAEKGDIGTVAVTSRCNQRTMFAPPKLTVAKVFTNLREIAALTGHSCQSKKIDKVKAML
VACRGCEPKFIVRSLSGKLRIGLAEQSVLVSLGHAVALTTPNQEEEDIVSKRKALSDSWK
KTLDEAALIVKTTYCEMPDYGKIIPAILKHGFKDLPNHCKLTPGIPLKPMLAKPTKGVSE
VLNRFQDIAFTSEYKYDGERAQIHILDSGDVRIYSRNQENNTTKYPDIIKRIPKSLGDNV
KSCVIDSESVAYDLEKKQIQPFQVLSTRKRKDANEADIKVQVCVFAFDLLYLNGESLVRK
PLRERRELLHANFKEIEGEFVFAKSMTSSNTEDIAEFLDESIKGNCEGLMVKTLDVDATY
EIARRSHNWLKLKKDYLEGVGDTLDLVVIGGYHGRGKRAGTYGGFLLACYDEESEDFQSI
CKIGTGLKDDELEQHTKFFKEHIIAKPRAYYRYDSSHEPDHWFDAVQVWEVKAADLSVSP
VHKAAMGLVDREKGISLRFPRFLRIRDDKKPEEATSGSQVADMYNNQDQIKNQKANQKST
ADEEDFY
NT seq 2904 nt   +upstreamnt  +downstreamnt
atggcgcagcgatctattatgacatttttcagtccgaaaccagcggaaaaaaaaaaaaaa
aaaaaggacaagaaaactgtgaatggtcttgagagatctcctttgaagaccaagaatgat
tgcacagaaagccccaaatcagaccaaactcgcaaaaaatccagaagaattttggacagt
gatgatgaagaggaagaaaacgccaccagccaacagtcgccatctcaacaaaatggagag
aaggaaacacctgagaaaaagaaggacaaaaagaagaaagaagaagacatggaagttgat
gagagtgaagacaaatcagacaaaggaaagactcctaccaaaccagatggcagtcaacct
tctacctcatcaccagagacaacttctccaagtggtatacctaagagaacaacagcacgt
aaacacatgaggaagagaaaaccagatgagatccagtctccaacgtctgagaaagaatca
ggacatgatgcgaagaaaatgaaaacagaagacaagagtgctgatgagaaagaggacaag
atggatacagatgagactccaaagaaaggaagttccaaaataaaggaagtagagactaag
gtgaaggaagaagagaaaagtcctaaagagaagaaggaaaaagaaaagaagaaagaaagc
tccaaaggaaaaaaggagagtccaaagagaaaggtgaagacaccggacacggagaaggac
aagaagaaagagaagacgccagacacaaagaaagagaggaaggacaagaagaaagaaaca
aaagagaaagcggaatcacctaaatggaaaaaggaagtcaaggaagaaaagaaagaggag
aaagacaaggaagagaaaaaagaggaaaagaaagagccagaaagtaaacctaaaaagaca
ggattcagttttgctcagatgggtaaagccacagagagttcttaccaacctgggacatca
tcatatcatcctatcaacgatgcatgctggaagaaaggagagaaagtgccttacctagca
ttagcacgcacattggaatgtatagaggagatatcaagtcgtcttaaaatcatggaaatt
ctcacagacttcttacgatcagtcatagtattaagtcctgatgacttacagcggtgtgtg
tacctatgtctgaataaacttgccccggcctatgaaggaatggaattagggatgggcgag
acacatttaatgaaagctgtatcacaagctactggtcgtagtatggagaagataaaggca
gacgttgctgagaaaggagacatagggactgtagctgtaacaagccgttgtaaccagcgc
accatgtttgcaccgcccaagttgaccgttgccaaggtgtttactaacctcagggaaatc
gcggcattgactggacattcatgtcaatctaagaaaatagacaaagtgaaagccatgttg
gttgcatgcagaggatgtgaacccaaatttattgtcaggtcactaagtggcaagctacgc
attggtttagctgagcagtctgtgttagtatcactaggtcatgcagtggcactcacaaca
cctaatcaagaggaggaagacattgtgtcaaagcgtaaagccttgtcagactcatggaag
aagacattggatgaagcggctctgattgtgaagaccacatactgtgaaatgccagattat
ggtaagatcatcccagcaatactaaaacatggcttcaaagatttacccaaccattgtaag
ctgacaccaggcataccattgaaacccatgttagctaaaccaaccaagggagtcagtgaa
gtactcaatagattccaagatattgccttcactagtgaatacaagtatgatggagagagg
gcacagatccatatacttgattcaggagacgtcagaatctacagtcgtaatcaggagaac
aacactacaaagtaccctgacatcatcaaaagaatccccaagagtctgggagacaacgtc
aaatcctgcgtcatcgactcggagtccgtagcgtatgatctggagaagaaacagatccaa
ccattccaggtgttgagtacaaggaagaggaaggacgctaatgaggctgatatcaaggtc
caagtttgtgtgtttgcatttgatttgctctacttgaatggtgagtcattagtgaggaaa
ccattgagggaaaggagagaactgcttcatgctaacttcaaagaaatagaaggagaattt
gtatttgctaaatctatgacatcatctaacacagaagatattgcagaattcttagatgaa
tcaatcaagggtaactgtgaagggttgatggtgaagacattagatgttgatgccacatat
gaaattgccaggaggtctcataattggctcaagctcaagaaagactacttagagggcgta
ggtgacacattagatttggtcgtcattggtggttaccatggcaggggcaagagagcaggg
acatatggaggattcctattggcatgctatgatgaagagagtgaagacttccaatcaata
tgcaagattggtacaggtctcaaagatgacgagttagaacagcacacaaagttcttcaag
gaacacatcatagcgaaaccaagggcgtattaccgatatgattccagccatgagcctgat
cattggtttgatgctgtgcaggtttgggaggtgaaggcagcggatttatctgtgtcacct
gtgcataaggcagctatgggcttagttgatagagagaaaggcatctcgcttaggttccca
agattccttcgtatccgtgatgacaaaaagccagaagaagcaacatctggttcacaggtt
gctgatatgtacaacaatcaagaccaaatcaaaaaccagaaagccaatcaaaaatctact
gcagacgaagaggacttctactag

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