Amphiura filiformis: 140146589
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Entry
140146589 CDS
T10871
Name
(RefSeq) ATP-dependent RNA helicase DDX1-like
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
afil Amphiura filiformis
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afil03041
]
140146589
03016 Transfer RNA biogenesis [BR:
afil03016
]
140146589
Enzymes [BR:
afil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140146589
Spliceosome [BR:
afil03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
140146589
Transfer RNA biogenesis [BR:
afil03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
140146589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
CHU_C
Motif
Other DBs
NCBI-GeneID:
140146589
NCBI-ProteinID:
XP_072024560
LinkDB
All DBs
Position
2:72911240..72944806
Genome browser
AA seq
739 aa
AA seq
DB search
MTAFAEFGVIEEITKAVDEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPV
IQIVHETLRDKDTKKSSGSTVRAESASTQWKMNVYDRGDAMAIDSDGLLCQTREHNSWHG
TRSNKAVIGKGKYYYEATVTDEGLCRVGWATSKADLNLGTDKQGYGFGGTGKKSFGRQFD
DYGEPFGKDDVIGCYLDLDSGSIYYSKNGADLGHAFDIPGHLLQQGFFVAVVLKNAEMKF
NFGQTELKYKPGHGFKSLCTAPKDCVIKSPNSGGGRAAATKDMPNAPQAIIIEPSRELAE
QTLNQIKLFKKNMKEYCPRELLIIGGGGAREQIDALNRGVDIVVATPGRIDDLMGTGKLS
LSQVRFFILDEADGLLKAGYGEQINRMWQQIPKVTADGKRLQMVVCSATLHNFDVKKLAE
KIMYFPMWVDLKGQDSVPETVHHVVVRVDPRKDTSWQRKGNKVQTDAVHAEDRITWGSQS
RETLSEGTKILKIDYLVKAIQEHKMDKAIIFCRTKIDCDNCERFLMTLGGGPRARPDHQF
SCVCLHSDRKPPERRENLLKFKESRVRFMICTDVAARGIDVKGIPYVVNVTLPDEKENYV
HRIGRVGRAERMGLAISLASEVPEKVWYHSCPSRGKSCYNTYLKQEGGCCIWYNEMQYLA
DIEEHLGVTIDEAKSDMKVQANEFDGKVEYGQKRKYMGSGYKGHVDILAPAVSELAQLEK
RAQSSFLGFSGVQDKLFAS
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgtttgcagagtttggtgtgatagaagagatcacaaaagctgtggatgaaatg
gattggttgttaccaactgatgtccaagctgaagcgatacctcttattcttggtggcggt
gatgttctgatggctgcagaaacagggagcggcaaaacaggggctttctgcttgcctgta
atccagatagtccacgagacattacgcgacaaagacacaaagaaatcttcaggttccact
gttagagctgaaagtgcttctacccagtggaaaatgaatgtgtatgaccgtggagatgcc
atggcaatcgatagcgatggattgttatgtcagactcgtgaacacaactcatggcatggg
actcgttcaaacaaagctgtgattggaaaaggcaagtactactatgaagccacagtgaca
gatgaaggattgtgtcgtgtgggttgggcaacctctaaagctgacctcaatcttggcaca
gacaaacaaggctatgggtttggtggaactggaaagaaatcctttggacgacagtttgac
gattatggagagcctttcggcaaggatgatgtcatcgggtgctacttagatttggatagt
ggctctatctactattctaaaaatggtgcagaccttggccatgcgtttgacatccctggg
catctattacagcaaggattctttgtcgctgttgtactcaagaatgcagaaatgaagttc
aactttggccagacggaattgaaatataaaccagggcatggcttcaaatctctgtgtaca
gccccaaaagattgtgttataaaatctcctaattcaggtggaggcagagctgcagcgaca
aaagacatgccaaatgcaccacaagctatcattattgagccctcacgagagcttgcagag
cagacattaaatcaaatcaaattatttaagaaaaatatgaaggaatactgcccaagggag
ttgcttatcattggtggtggtggtgccagagaacaaattgatgcactcaacagaggggtt
gatatagttgtagcaacaccaggaagaatagatgacttaatgggcactggcaaactctcc
ctatcacaggtccggttctttattcttgatgaagcggatggtttattaaaagccggctat
ggagagcagatcaaccgtatgtggcaacaaatccctaaagtaacagcagatggaaagagg
ttacagatggtggtatgttcagctactttacacaactttgatgtcaagaaattagctgag
aaaattatgtatttcccaatgtgggtggatctcaaaggacaggacagtgtacctgagact
gtgcaccatgtggttgttagagtggatccacgtaaggacacgtcttggcagcgtaaagga
aacaaagtgcaaacagatgctgtccatgctgaagataggatcacatggggaagccaatca
agagagactctctctgaaggcaccaagattctgaagattgactatctagtgaaggccata
caagaacacaaaatggacaaagcgattattttctgtaggaccaagatagattgcgacaac
tgtgaacgattcctcatgacattgggaggaggtccaagagctcgtccagatcaccaattc
tcatgtgtatgtttacatagtgacaggaaaccaccagaacgtagagaaaatctactcaaa
ttcaaggagagtagagtgcgtttcatgatatgcactgatgtagcagcccgaggtatcgat
gtcaaaggaattccatatgttgtgaatgtaaccctaccagatgagaaggagaactatgtc
catcgtatcggtcgtgtgggccgagcagaaaggatgggtctagccatatcgttagcatct
gaagtccctgagaaggtttggtaccattcttgtcccagcaggggtaaaagctgttataac
acctatctaaagcaggaaggtggatgctgtatatggtataatgaaatgcagtacttggcg
gatatagaagagcatcttggtgtaaccattgatgaggcaaaatcagatatgaaggtacaa
gctaatgaatttgatggcaaagtggaatatggacaaaagagaaaatacatgggttctggt
tataaaggacatgtagacatcttagcaccagccgtgtcagagttggcccagctagagaag
agagcgcagtcttctttcttaggattctccggcgtgcaagataaactgtttgcttcttga
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