Amphiura filiformis: 140148195
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Entry
140148195 CDS
T10871
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
afil Amphiura filiformis
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afil04121
]
140148195
Enzymes [BR:
afil01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
140148195
Ubiquitin system [BR:
afil04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
140148195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
PDZ_2
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
RING_XB3-XBAT31
zf-RING_5
zf-rbx1
Sina_ZnF
zf-TRAF
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
140148195
NCBI-ProteinID:
XP_072026156
LinkDB
All DBs
Position
3:complement(21121555..21381266)
Genome browser
AA seq
1129 aa
AA seq
DB search
MGFDLDRFTRVVDDDFKCSICLGVFENPLATPCGHVFCANCVLPWVVEHGSCPLKCENFS
TKELNSVLPLRNLILKLDIRCDNYLRGCEEVTTIPMLSQHLEDCDFVPVQCSNKGCQEEL
SIKDQVVHETQCCEFRPVGRCDKGCGLVLQHNGITDHVCLKALQTHANSLQSKIANQEHN
LKKTTMRFGKREKSLLSQIACLQNEIQMQALKYQKKLNQAKAEIEYLNALADYEKPLNDN
EEEKLSIVINKDNNNGSLGLNIIGGSKTEGSITEGIIVSRIMEGGAADRASLQVHDRITK
VNGIDLSKATHEEAVEAFKNAAEPIAVEVLRRAPCTTKVNVGDKCRTVCTCNVGTQTDLQ
SEDFLWKMLQNCPSPLSPMSPMTPTGKSDVDFDGLCEEPLIDSELMNDLEGMENMDMPII
DEDGLDKAYEMEYEEIVLCRNSGSDKLGLTLCYGQEDDIGIFISEVDPNFIAGEDGRIKE
GDQILQINGEDVHNKDQALELFAQQVETTMLVCRPQLRLEDCLYDERNALLDDLQLDMLE
QTHQEAMQFTSLLEQDDDDDDDDDECDDQDGQTDTTGTTTTGSTNPHEKDSGVGRATDGA
SNTTDDDAGSNQKFPMDSASLGSGEMRYSNDSFTSNEAQETEYNGQISLEDCMKFQAALE
SKCDKHMRSDTDESMRGKDSKVMRLGSDSMETTSASGDSLNRNCRNRLGSDPEEDQSLEQ
LNGQSSSQLSSPVTNGNMADVFGESKDIDTEKDTRNMDSSSAKSSPKHRPGELVIGDTED
SADESPAPLTVQKTPKRQPSDSTVRQHRAPRTVPGSPSRSKSSSSSSRDRSKSDRSSSSD
SRKAKGSPAKSQSQQQQTPHQLLQQQLQQQLPLDRNVPLLPYPRRPATNPHLRGQQFNRN
PYLMQQEHQAQLIRNNWKLQQQHQSLRQNMQKYGSMQSILSIPAHAKHYRSYMHLVTQNE
ENALTAADSGTDRSARSAEWKVKIRSDGTRYITKKSTARDRVLKERANRIREERTGGLTT
DDEAVSEMKLGKYWSKDDRKRHLERARDQKRRREYMVQARMECLQEQDELEGKKAVNIVE
LSHRKLLKKKGRKMLMDDFTTVQEMLVHGTRISPETAKEFNPWLNVTTV
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcgatttggatcgttttactagggttgtggatgacgacttcaagtgcagtatt
tgtcttggtgtttttgagaatcctttagctactccgtgcggacacgtcttctgtgcgaac
tgcgttcttccctgggtagtagaacacgggagttgcccgctcaagtgcgaaaacttttct
accaaggaacttaacagtgtactaccacttcggaatttgattctcaaacttgatattcgc
tgtgataattatctccgaggctgtgaggaagttacaacgatcccaatgttgtctcaacat
ttggaagattgcgattttgtgccagtgcagtgctctaataaagggtgtcaggaggagctc
agcatcaaggatcaagttgttcatgagacgcaatgttgcgagtttcggcctgtgggtcgc
tgcgacaagggttgtggcctggtgttgcagcataatggaataacagatcatgtctgctta
aaggccctacagacccatgctaactcgctgcaatcaaagattgccaaccaagagcataat
ttaaaaaagaccaccatgagatttggaaaaagagaaaaatctttgctctcacaaattgca
tgcttgcaaaatgagatacaaatgcaggctttgaaataccagaagaaattgaaccaagca
aaagcagagatagaatacctcaacgctctggctgattacgaaaagcctctgaatgataac
gaagaggagaaactctctatagtcataaacaaggataataataatggcagtcttggattg
aatattatcggtggatcaaagacggaggggagtattacggaaggaattatcgtctctcgc
atcatggaaggaggagcagcagacagagccagcttgcaagttcatgaccgtattaccaag
gtaaacggcattgacttgtccaaagctactcatgaagaagcagttgaggccttcaagaat
gcagcagaaccaattgcagttgaagtcctaagaagggcaccctgtaccactaaagtcaac
gtcggtgacaagtgcagaaccgtctgcacgtgtaatgtaggaacacaaaccgatctgcaa
agtgaagatttcctttggaagatgttacagaactgtccttcacctctttccccaatgtca
cccatgacaccaacaggaaaatctgatgtagattttgatggtttatgtgaagagcctttg
atcgacagtgaattgatgaacgatctagaagggatggagaatatggacatgccaatcatt
gatgaagatggtctggataaagcttatgaaatggagtatgaggaaattgtattatgtaga
aacagtggatctgacaagcttggtctcaccttgtgttatggacaagaggatgatatagga
atcttcatcagcgaggttgatccaaatttcatagcaggtgaagatggcagaataaaggaa
ggagatcaaattctacagatcaatggcgaagatgtacataacaaagatcaggcgttggaa
ttattcgcacaacaagttgaaacaacaatgctagtatgcagacctcaactaaggttggaa
gactgtttgtacgatgaacgcaatgctctattagatgatcttcaattagacatgctagaa
cagacgcatcaagaagccatgcagttcacatctctactagaacaagatgatgatgatgat
gacgatgatgatgaatgtgatgatcaagatggacaaacagataccacagggacaaccacc
acaggctcaaccaatcctcatgagaaagacagcggagtaggcagagcaacagatggtgct
tccaacacaacagatgatgatgcaggtagcaaccagaaatttccaatggactctgccagt
cttggcagtggtgaaatgcgctattccaacgatagttttacatccaatgaagcacaagag
actgaatataatggacagatatcacttgaagactgtatgaaattccaagcagcacttgaa
agcaagtgtgataaacacatgcgcagtgatacagatgaaagcatgagaggcaaagactct
aaagttatgagactaggttctgattccatggaaacgactagtgcgagcggggactcgcta
aatcgcaattgtaggaacagattgggtagtgatcctgaagaggatcaatccttagagcag
ctgaatgggcaaagtagctcacaattgtctagccctgttaccaatggtaacatggcagat
gtgtttggggaatccaaagacattgatactgaaaaagacactagaaacatggacagcagc
agtgcaaaaagtagtcccaaacatagaccaggtgaactggttattggggatactgaagat
tctgctgatgaaagtcctgctcctttgactgtacaaaaaactcccaaaagacagccttca
gactcaacagtcagacaacacagggctccaagaactgttccaggcagcccaagtcgcagt
aagtcatcatcttctagttcacgagatcgctcaaagagtgatcgttcaagttcttcagat
tcgcgaaaagctaaaggtagtccggccaaatcgcaatcacagcagcagcaaacgccacat
cagctgctacagcagcaactacagcagcaacttccccttgacaggaatgtgcctctgtta
ccgtatccccgtcgcccagcaacaaatcctcatctacgagggcagcagtttaaccgtaat
ccttatctcatgcagcaagaacaccaggctcagctaatcaggaataattggaaattacag
cagcaacatcagtcactgaggcaaaacatgcagaaatatggttccatgcaaagtatcttg
agcattcctgctcatgccaaacattataggtcttacatgcaccttgtaactcaaaatgaa
gaaaacgcactcacagcagctgacagtggtaccgacagatcggcaaggtcggctgaatgg
aaagttaagattcgcagtgatggcactaggtacatcacaaagaaatcaactgcgagagat
cgcgtactcaaagaaagagccaatagaataagggaagaacgtactggcggtttaacaacg
gatgatgaagcggttagcgaaatgaaactgggaaagtactggagcaaagatgacagaaaa
cgacatctagagcgtgctcgggatcagaaaaggcgacgagaatacatggtgcaggctcgt
atggagtgcctgcaagaacaagatgaacttgaaggcaagaaagctgtgaatattgttgaa
ctaagccataggaaattactaaaaaagaaaggacgtaagatgctgatggatgattttaca
acagtgcaagaaatgctggttcatggcacacgtatcagtcctgaaacagccaaagaattc
aacccatggctcaatgttaccacagtatga
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