Amphiura filiformis: 140148723
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Entry
140148723 CDS
T10871
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
afil Amphiura filiformis
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
afil03016
]
140148723
Enzymes [BR:
afil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
140148723
Transfer RNA biogenesis [BR:
afil03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
140148723
Prokaryotic type
tRNA splicing ligases
140148723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
140148723
NCBI-ProteinID:
XP_072026868
LinkDB
All DBs
Position
3:complement(53454394..53472313)
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AA seq
505 aa
AA seq
DB search
MSRSYNEELEYLSKITDNCWQIKKGFVKNMKVEGRFYVNDTLERLMLEELRNSCRNTGMG
GFLPGVKQIANVAALPGIVGYSVGLPDVHSGYGFAIGNMAAFDMSNPDSVVSPGGVGFDI
NCGVRLLRTNLDAKDVMPVKEQLAQSLFDHIPVGVGSKGVIPMAARDLEEALEMGMDWSL
REGYAWAEDKEHCEEYGRMLQADPDKVSARAKKRGLPQLGTLGAGNHYAEIQVVEEIYDA
HASKKMGIDHKGQVCVMIHSGSRGMGHQVATDALVSMEKAMKRDKIEVNDRQLACAKIHS
QEGQDYLKAMAGAANYAWVNRSSMTFLTRQAFAKQFRTTPDDLDMHIIYDVSHNIAKVEE
HMIDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMK
QTFGTTCHGAGRAWSRAKSRRNLDYNTVLSKLAEQNISIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLKPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtccagatcatataatgaagaacttgaatatctcagcaagattacagacaactgctgg
cagataaaaaagggatttgtgaaaaatatgaaagttgaaggcagattttatgtgaatgac
acattagaaaggctcatgttggaggaattacgtaattcatgcagaaatacaggcatgggt
ggttttctaccaggagtgaagcaaatagctaacgtagcagctttaccaggcattgttgga
tactcagtgggactaccagatgtacactctggctatggatttgctattggcaacatggca
gcatttgacatgagcaaccctgattctgttgtgtcacctggaggggtcggctttgacata
aattgtggagtgaggttactaaggactaacttggatgctaaagatgtcatgccagtcaag
gaacaacttgctcagtcattatttgatcacatcccagtgggagtgggttctaaaggtgta
atacccatggcagccagagatttagaagaagccttggagatgggtatggactggtctctc
agggaaggctatgcatgggctgaggacaaagaacattgtgaggaatatgggaggatgtta
caggctgatccagacaaagtcagtgccagagcgaaaaagagaggtctaccccagcttgga
actctaggtgctggtaatcactatgcagagattcaggtagtagaagaaatctatgatgct
catgcatccaagaagatgggcattgatcacaaggggcaagtgtgtgtcatgattcatagt
ggaagcagaggaatgggacatcaggtcgcaacagatgcattggtgtcaatggagaaagct
atgaaacgagataaaattgaggtgaatgataggcagttggcttgtgccaagattcactct
caagaaggtcaagattacctgaaagctatggcaggtgctgccaattatgcctgggtcaac
aggtcaagtatgaccttcctaaccagacaggcttttgctaagcagttccgtaccacacca
gatgacctggatatgcatatcatatatgatgtatcacataatatagcaaaagtagaagag
cacatgattgatggcaaacagaagacattattagtgcataggaagggttccacaagagca
tttccacctcatcatccccttataccagtagactatcagttgacagggcaaccagtatta
attggaggtactatgggtacatgtagctatgtattgactggcacagaacaaggaatgaaa
caaacatttggtacaacatgccatggagctggtcgagcatggtcccgagctaaatcaagg
cggaatcttgactacaatacagtgttgagtaaacttgctgagcagaacatctcaatcaga
gtagcatctcctaaacttgtcatggaagaggctccagagtcttacaagaatgtcacagat
gttgtcaacacctgtcatgcagcaggcattagcaaaaaggctatcaaattgaaacctata
gctgtaatcaaaggatag
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