Amphiura filiformis: 140151096
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Entry
140151096 CDS
T10871
Name
(RefSeq) PMS1 protein homolog 1-like
KO
K10864
DNA mismatch repair protein PMS1
Organism
afil Amphiura filiformis
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afil03400
]
140151096
DNA repair and recombination proteins [BR:
afil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
140151096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HATPase_c
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
140151096
NCBI-ProteinID:
XP_072029412
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Position
4:complement(56465309..56486690)
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AA seq
1101 aa
AA seq
DB search
MFYVCRCVILTIYLILFLFLQQYTMSSLKQLSGETVRLITSSQVITSVYSVVKELVENSL
DANADNIDVKLENFGFDKIEVRDNGDGITTENALYMAQKHYTSKISDHGDLEALATYGFR
GEALGSLCAVSNVSIVTKTKEDAVSNLYTLDHHGMIASTKPSHMGNGTTVTATNLFKNIP
VRRQYYSNTKRCREELKKVEDLLMSYGAIRHDIRVSLSHNKKPVWQKNKTSSQRNALLNT
WGGSVMKQMTHTQKTDPATQVTIEAYLPKLDSDHQLTSRSVADRCWISVNKRPVTLKEIE
KTVKQYYSGTTKQDTSSLRHLVMYVDITMPTHLVDVNLEPNKTRVLLQNSDAILSLLTDM
LQDLYGPLHGKQSTDKVESISSTETRADNTEREDLDRSSESVDNEPHVDQQKNDQRTQPE
HHSLQFKLVLEGHNEDKKDFCLGENNSKEDGSIFELPSHNTSVSRSDVGLTDSEAVSGQQ
ASDHAQTDTGDASTNDFTDLKSCELIPSTQPEFNLMDSSLDIFCDTATETNEPIIGRTDD
DVTNQPAVRNAFYSSNQTNISESKESSVTGDMTSIDWSKGVGLKNSLGCPIQPSVLLVPG
KGLREKQNIVSSTTNFSSITGNHIGNVSNSSSNQKAENQLVANDNSVRNSSTNHNLAEEL
STHLTSENKLQSNISSDKDVVTSQTTEIELCTAMFEQEAADGGPDQTKSPGRTRRPLEEM
SGQTTLYDIIESTAVKRPVEAFAFFSRQFRAAIVKENPNLDFAAVNSVLEKKWEELSEDV
KREYQKKGQRDIMRYHEQVKNVKQTNCDRPGVLQLPPKKKKKLEKLANQNLIDEMLSSQG
CKLSKKKKNKSAKAAAVKEVTVRFSVLGLGEDQKKCTEDRFGVENKWRLIGQISSNNLWL
AVKEHQLLILNQYRIEEALLYTRLMATHILPVECCEIPVLLNKSMLGGDENWVSLLSLQS
IVTPPDPDRYFVDERLKSNGFHIKQTTDPETSDVRIQLIAMATCIPYYGIHDLKEILDLI
TQGGNSLAKCRALKTSNYLQGEAMRMARNLSADLTEEEIYEIISRMEKYLLPRQQECLHG
KPFIEVLYDMNQNDLDSLEVT
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgttttatgtgtgtagatgtgtcattctgacaatttatttaattttgtttctatttctt
cagcaatacacaatgtcttctctgaagcaattatcgggagaaactgtcaggcttattacc
agttcacaggtaataacctctgtctacagtgttgtaaaagaattggtggaaaattcactg
gatgctaatgctgataacattgatgtcaaactggaaaactttggctttgacaaaattgaa
gtacgagacaacggtgacggcatcacaacagaaaatgcactctacatggcgcagaagcat
tacacatccaagatcagtgatcatggtgacctagaggcgttagcaacatacggtttccgt
ggtgaagctctagggtcattgtgtgctgtgtccaatgtttccatagtgacaaagacaaaa
gaagatgcagttagtaatttgtacaccctggatcatcatgggatgatagcaagcacaaaa
ccatctcatatgggcaatggtacaactgtgactgccaccaatctcttcaagaacattcca
gttcgcagacagtactatagcaacacgaaacgatgtcgtgaagagctgaagaaagttgaa
gatctgctgatgtcctacggcgccatcagacatgacatcagagtatccttgagtcataat
aagaaaccagtttggcagaagaacaagacatcaagtcagaggaatgccttattgaataca
tggggtggaagtgttatgaaacagatgacacatactcagaaaacagatccagcaacacag
gtcaccatagaggcttacctgcctaagttggattctgaccatcaactgaccagtcgttct
gtagctgaccgctgctggataagtgttaacaaaaggcctgtcacattgaaagaaattgaa
aagacagtgaagcagtactactctggtacaactaagcaggataccagttcactccgccat
cttgtcatgtatgtggatatcaccatgccaacacatcttgttgatgtcaacttggaaccc
aataaaacgagagtgctgctgcaaaactcggatgccattctgtcattattgactgatatg
ttgcaagatctatatggacccctgcatggcaagcaaagcacagacaaagttgaatccatc
tcatcaacagaaacaagagctgataacacagaacgagaagatctcgacaggagttcagag
tctgttgataatgaaccacatgttgatcagcagaaaaatgatcaaagaacacaaccagaa
catcattcacttcagttcaaacttgtattagagggccataatgaagataagaaagacttt
tgtcttggagaaaataactcaaaagaagatggatccatatttgagctaccaagtcataac
acttcagtttcaagaagtgatgtgggattaactgattcagaagcagtctcaggacaacaa
gcttctgatcatgcacaaactgatactggagatgctagtaccaacgattttaccgatttg
aaaagttgtgagttgattccatctactcagccggaattcaatttgatggattcaagtctt
gatattttttgtgacactgccactgaaacaaatgaacctatcattggtaggactgatgac
gatgtgaccaatcagccagccgttagaaatgcgttttatagttcaaatcagacaaatata
agcgagtccaaagaatcaagtgtcaccggtgatatgaccagcatagactggagtaaagga
gttggtcttaaaaatagccttggttgtccaattcaaccatcggtccttctggttcccgga
aaaggccttagagaaaaacaaaacattgtatcaagcacaaccaatttcagtagtattaca
ggtaaccacataggtaatgtcagcaactcatcatccaatcagaaggcagaaaatcaactt
gtagccaatgacaattcagtaagaaattcatcaaccaatcacaacttagcagaagaactt
tcaactcatctaacttcagagaacaaattgcaatctaatatctcctcagataaagatgtt
gtaactagtcagactacagaaatagagctatgcactgctatgtttgagcaggaagctgct
gatggagggccagatcagaccaagagtccagggaggacaagaagaccattggaagaaatg
agtgggcagacaactctatatgatatcattgagtctacagcagtcaaaagaccagtagaa
gcatttgcattcttctcaagacaatttagagctgcaattgtgaaggaaaaccctaatctt
gattttgctgctgtgaattcggtgttagagaagaaatgggaggagttatcagaagatgtg
aagagagaataccagaagaaaggacagagagacataatgagataccatgaacaagtaaag
aatgtgaaacagactaactgtgatcgacctggagttttacaattgcctccaaagaaaaag
aagaagctggaaaagctggccaaccagaatttaatagatgagatgttatcctcacaaggg
tgtaaattatccaagaaaaagaagaataagtcagccaaagcagcagcagtcaaagaggtg
acagtgagattcagtgtacttggattaggagaagaccagaaaaaatgcacagaagacagg
tttggtgttgaaaacaagtggaggttaattggtcaaatatcatccaataatctatggctt
gcagtgaaagaacatcagttattgattttaaatcagtacaggatagaagaggccctgtta
tatactcgccttatggctacccacatactgccagtagaatgctgtgaaattcctgtcttg
ctgaataaaagtatgttaggtggcgatgagaactgggtgtcattgttgagtctacagagt
atagtcacaccccctgatccagacaggtattttgttgatgaacggctcaaatctaatgga
ttccacatcaaacaaaccacagatccagaaactagcgatgtgaggatacagttgattgcc
atggcaacttgtataccatattatgggatacatgacttgaaagaaatcttggacttgata
acacagggcggcaatagtcttgctaaatgtcgagctcttaaaacatccaactacctccag
ggtgaagcaatgcgaatggcaagaaacctgtctgccgatttaacagaagaggagatttat
gagattatatcacgtatggagaagtatttgctaccaagacaacaggagtgtttacatggg
aaaccatttattgaagttttatatgatatgaaccaaaatgatttggattcgttggaggta
acatga
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