Amphiura filiformis: 140151130
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Entry
140151130 CDS
T10871
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
afil Amphiura filiformis
Pathway
afil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140151130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140151130
Enzymes [BR:
afil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
140151130
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
140151130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
Cnl2_NKP2
PSCyt2
Motif
Other DBs
NCBI-GeneID:
140151130
NCBI-ProteinID:
XP_072029451
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All DBs
Position
4:58482571..58538253
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AA seq
642 aa
AA seq
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MDVTKTNFKSACRILTDVIKHSSFVAIDGEFTGLHNYVNPNAFDTPTDRYHKLRQGSMDF
LLVQFGVCVFKYDGKNSRYVAHPFNFYVFPRPTLRDARDQRFLCQSSSMDFLASHGFDFN
KVFREGIPYLTPSDKERMLELVRERHNMHEQGLPAPPEASPAFVSPAAKKPMEIPEKEKD
FVNGVIKLVEDFINDSGKQTLSLEPCNGFRRKLTYQAVRSKFTSGLHLDTQTGENKNERF
IMIRKAGEEDQKKLEQQRLKSDLDEVDEAAGFARVIQILSESGKLIIGHNMLLDIMHTLH
QFSCPLPESLNEFKALATCVFPKLIDTKVMASNQPFKNMIPSTALNDLWKHLDGNQFNKP
QFEVAQNYTDYTKSEQFHDAGYDAFITGQCFATMANYLGTFMTPPQKRVSPSSQLLEPFL
NKVCMFRVQDIPYMNLTGKDLQPSRAHVFHVTFPQEWKGSDLYQLFGDFGPVYIGWIDST
TAFVSLSNQDRADSVLKGIEPSPLYQVISYKQYREQFPADPQPALEIPAPYHETATVAPP
DIKSPPDTGYDASSSRGSRGVKRHHDSGDSTDADREVAELMHGKKHKAMDPNAKPFVSRI
TPPPAEQDNKDKEITPKKIDGASPNESTKKHPDKLFEEPTTW
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggatgtaaccaaaacaaatttcaagagtgcctgtcgcattctgaccgacgtcatcaaa
cactcgtcgtttgttgccatagatggtgaattcacaggactccataattatgtaaatcct
aatgcatttgatacacctactgacagatatcacaaacttagacagggttcaatggacttc
ttactagttcagtttggggtgtgtgtcttcaaatatgatggcaagaattcaagatatgta
gcacatccattcaacttctatgtctttccacggccaacacttagagatgctcgtgatcag
aggtttctatgtcagagttctagcatggatttccttgctagtcatgggtttgatttcaac
aaggtgtttagagaaggtataccataccttacaccaagtgacaaggaaagaatgctagag
ttagttcgtgagagacataacatgcatgagcaaggtttaccagctccgcctgaagcaagc
ccagcatttgtatcccctgctgccaagaaaccaatggaaataccggaaaaagagaaagac
tttgtcaatggagtcataaagcttgtagaagatttcatcaatgattcagggaagcagacg
ttaagtcttgaaccttgtaatgggttcagaagaaagctgacataccaagctgtgaggtca
aaattcacatctggacttcatttagacacacaaacaggggaaaataagaatgaacgattc
atcatgattaggaaagcaggggaggaagatcagaagaaacttgaacaacagaggctcaag
tcagacttggatgaagtagatgaggcggcaggctttgctagggtgatccaaatcttgtca
gaatcaggcaaattgatcattggacataacatgttattagatattatgcatacactacac
cagttcagttgtcccttaccagagtcattaaatgaattcaaggctctagctacatgtgtg
tttccaaagctcatagacactaaagtaatggcatcaaatcaaccgtttaagaatatgata
cccagtacagctcttaatgacttatggaagcatttagatggaaaccaattcaataagcct
caatttgaggtagcacagaattacaccgattacaccaagtcagagcagtttcatgatgca
gggtatgatgcatttataacagggcagtgttttgctacaatggcaaactacttgggtacc
ttcatgactccacctcagaagagagtgtcgccttcatctcagctattagaaccatttctc
aataaagtatgcatgtttagagtccaagatataccatacatgaatctaactggaaaggac
ttacagccaagtcgagcccatgtgttccatgttacattcccgcaagaatggaaaggctct
gatctgtatcagctatttggagactttggtccagtctatataggatggatagatagtact
acagcatttgtgtcactctcaaaccaggacagggctgattcagttttaaagggaatcgaa
cctagcccactctaccaagttatctcttacaagcaatacagagaacagttccccgctgat
ccccaaccagcgctagagattcctgcaccataccatgagactgctacagttgctccacca
gacataaagagcccaccagacactgggtacgatgccagctcaagtagaggaagccgaggt
gtgaagagacatcatgactcgggtgatagtacggatgcagatagagaggtggcagaactc
atgcatggcaagaaacacaaagcaatggatccaaatgccaaaccatttgtttccaggata
actccaccaccagctgaacaggacaacaaagataaagaaataacaccaaagaaaatagat
ggtgctagtccaaatgaatcaaccaagaaacatccagacaagctatttgaagagcctacc
acttggtaa
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