Amphiura filiformis: 140151194
Help
Entry
140151194 CDS
T10871
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
afil Amphiura filiformis
Pathway
afil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140151194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afil03041
]
140151194
Enzymes [BR:
afil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140151194
Spliceosome [BR:
afil03041
]
Complex C
Other components
Step II factors
140151194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
S1
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
Sigma54_activ_2
PhoH
TsaE
nSTAND_NTPase5
ABC_tran
AAA_16
NB-ARC
CDC45
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
140151194
NCBI-ProteinID:
XP_072029545
LinkDB
All DBs
Position
4:complement(64281573..64313813)
Genome browser
AA seq
1211 aa
AA seq
DB search
MEELNKLEHLSLVSKVCTELDNHLGLNDKDLAEFIIDIARKNSTLEKFKAALEKNGADFP
DSFASNLLRLIQHMMPQSAPVKPKKKKPKKMTEIDKKKEKFPALCMPDDPGTIKNLLTED
EKVAQSAMDELEALIPSMKQEDVKPVKKERRSRSRSRSPEKERRKHKDKHKNRHKDKKHR
KRSRSRSPERDHDRHRRRSRSRSRHRSRSRSSSRERKHNRHRDRDHRDRHRDRDSERDHS
KAKSDRFVDRPPAMDPEVGEIYEGKVTSIMNYGCFVQLEGLKRRCEGLVHISELRREGRV
ADVNDVVARGQKVKVKVLSIAGTKIRLSMKDVDQNTGEDLNPKTASKDSSLETEENMRNP
DRPSNLPLVTVAEADDVGIRKRVQRVTSPEKWELKQMQAASCIELPDLPDFDEVTGVLPK
DDDSDEEVEIELKEEDPPFLRGHGRQSVDLSPVRIVKNPDGTLSKAAMMQSALAKERREM
KQATERAEAENIPTGMNKNWIDPMPESERALVANVRNMGFGAQEMPEWKKSAFGGNKASY
GRRTQMTIMEQRQSLPIYKLKQQLVQAVKENQILVVIGETGSGKTTQITQYLAEAGFTVN
GKIGCTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRFEDCTSPETKIKYMTDGMLLREC
LIDGDLSSYSIIMLDEAHERTIHTDVLFGLLKKTVKRRPDMKLIVTSATLDAVKFSQYFY
EAPIFTIPGRTFPVEILYTKEAEADYLDASLITVMQIHLTEPPGDILLFLTGQEEIDTAC
EILFERMKSLGPEVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDG
IYYVVDPGFVKQKVYSSKTGMDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRD
EMLPTAVPEIQRTNLASTLLSLKAMGINDLLSFDFMDAPPTETLITAMEQLHSLSALDDE
GLLTRLGRRMAEFPLEPMLCKVLIMSVHLGCSEEILTIVSMLSVQNVFYRPKDKQAIADQ
RKAKFHQAEGDHLTLLAVYNSWKNNKFSNPWCFENFVQARTLRRAQDVRKQLLGIMDRHK
LDVVTCGKNTARVQKAICSGFFRNAAKKDPQEGYRTLVDSQVVYVHPSSALFNRQPDWVI
YHELVMTTKEYMREVTTIDPKWLVEYAGSFFRFSDPTKLSRHKKQQRLEPLYNKYEEPNS
WRISRQRLRRN
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggaagagctgaataaattggaacatctctcattggtgtccaaggtttgcacagagctt
gataaccatcttggcttaaatgacaaggatctggctgaattcattatcgacatagccaga
aaaaactctaccctggaaaaatttaaggctgccttggaaaaaaatggtgccgattttcca
gactcatttgcatccaatctgttgcgacttattcagcacatgatgccacaaagtgcacca
gtcaagccaaaaaagaagaagccaaagaaaatgacagaaattgacaaaaagaaggagaaa
tttccagcattatgtatgccagatgatccaggtactattaagaatttgttaacagaggat
gagaaggtagctcaaagtgcaatggatgagttagaagcactcataccctctatgaaacaa
gaagatgtgaaaccagtcaagaaggagagaagaagtcgcagcagaagtagaagtccagaa
aaagaacgccgaaaacacaaagacaaacacaagaacagacacaaagacaagaagcaccga
aaacgctcacggtcaagaagtccagaaagagaccacgacagacatcgtaggagaagccgc
agtagaagtaggcacagaagtagaagtcgcagcagcagccgagagcgcaaacataataga
catagagatagggatcacagggatcgtcatcgtgacagggatagcgagagagatcatagt
aaagccaaatcagaccgatttgtagatagaccacctgcaatggaccctgaagtaggagag
atatatgagggcaaagtgactagtataatgaactatggctgctttgtgcagctggaaggc
ttgaagagaaggtgtgaaggacttgtacatatatcagagcttcgaagagaaggtcgtgta
gctgatgtaaatgatgttgttgcaagaggtcaaaaggtcaaagtcaaagtactctccatt
gccgggacaaagatacgtttgtccatgaaggatgttgatcagaacacgggagaagacttg
aatcccaaaactgcatccaaggatagttctttagagacagaggagaatatgaggaatcct
gacagaccgtctaatctaccattggtgactgttgcagaggcagatgatgtaggtataagg
aagagagtacagagagtgacatcacctgagaaatgggaactcaaacagatgcaggcagcc
agttgcatagagctaccagacctaccagattttgatgaagtgacaggtgtgttgcccaaa
gatgatgactcggatgaagaggttgaaattgaactgaaggaagaagatccgccattcctt
agaggtcatggaagacagagtgtggatcttagtcctgtaaggatagtcaagaatcctgat
ggcacactttccaaagctgcaatgatgcaaagtgccctcgccaaggaacgacgagagatg
aaacaagcgacggagagagcagaggcagagaatattccaacaggaatgaacaagaactgg
attgatccaatgcctgaaagtgagagagccctggtagccaatgtacgtaacatgggcttt
ggtgcacaggagatgcccgagtggaagaagagtgcatttggaggcaataaggcttcgtat
ggtcgcaggacacagatgaccatcatggaacagagacaaagtctgcccatatacaaactc
aaacaacagcttgtgcaggctgttaaagaaaatcaaattcttgttgtaattggtgagact
ggtagtggcaagaccactcaaattacccagtatttagctgaagctggtttcacagtgaac
ggcaagattggatgcacccagcctaggcgtgtggctgccatgtctgttgccaagagagtg
tctgaggagtttgggtgtcggttaggccaagaggttggctacaccatccgttttgaagac
tgcacatcgcctgagactaaaatcaagtacatgacagacggtatgttgcttcgtgagtgc
ctaatagatggcgatctttcatcctattccatcataatgttggatgaggctcatgagaga
acaattcacactgatgtcttgtttggccttctgaagaagacagtgaagaggcggccggac
atgaaactgatcgtcacatcggctactttggatgctgtcaagttctcacagtacttctat
gaagcgcctatatttaccattcctggccgtacgttcccagtagagattctatataccaaa
gaggcagaggcagattatttggatgcgtctctgatcacagtcatgcaaattcacctcaca
gaaccaccaggtgacattctactatttcttacgggtcaagaagagattgatacggcgtgt
gagatcctctttgagcgcatgaaatccctgggtcctgaggtaccagagctcatcatctta
ccagtgtattctgccttgcctagtgaaatgcagaccagaatctttgaccctgcaccacct
ggtagcagaaaggttgtgattgcaacaaacatcgctgagacctccctaaccattgatggc
atctactatgtagtggaccctggctttgtcaaacagaaagtgtatagctccaaaactggc
atggatcaacttgtagtcacacctatatcccaagcccaggccaagcagcgagctggacgt
gccggtagaaccgggcccggcaagtgctatagattgtacacagagcgtgcttacagagat
gagatgcttcccacagctgtgccagagatacagagaactaatttggctagcaccctgcta
tctctgaaagccatgggcatcaatgatttgttatcgtttgattttatggatgcaccacca
acagagacattgataacagcaatggaacagttgcattcactcagtgcacttgatgatgaa
ggactgctgacaagactaggcagaaggatggcagagtttcccttagagcccatgttgtgt
aaggtgctaattatgtctgtacatctaggatgcagtgaagaaatcctcaccattgtctct
atgctgtctgtacagaatgtattttacagacccaaggataaacaagcaattgcagatcag
aggaaagcaaaattccaccaggcagaaggtgatcatctcactctactggcagtctataac
tcgtggaaaaacaacaagttctccaatccatggtgctttgaaaactttgtacaggcgcgg
acattacggcgagcccaggatgtcaggaaacagttgttgggcataatggacagacacaag
ctggacgttgttacatgtggcaagaatacagccagggtacagaaagccatatgcagtggt
ttcttcagaaacgcagctaaaaaggatcctcaggaaggctacagaaccttagttgacagc
caggtggtatatgtacatccatctagtgctctcttcaacagacaaccagattgggtaatt
taccatgagcttgtcatgacaaccaaagagtacatgagagaggtgaccaccattgatccc
aaatggctggtggagtatgcaggctcattcttccgcttttcagatcctaccaaactcagc
agacacaagaagcaacagagattggagccactctacaacaaatacgaggagccgaactca
tggcgtatatctcgccagagactcagaaggaactga
DBGET
integrated database retrieval system
