Amphiura filiformis: 140151210
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Entry
140151210 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
afil Amphiura filiformis
Pathway
afil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140151210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afil03041
]
140151210
03009 Ribosome biogenesis [BR:
afil03009
]
140151210
Enzymes [BR:
afil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140151210
Spliceosome [BR:
afil03041
]
Complex A
U2 snRNP components
U2 related factors
140151210
Complex B
140151210
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
140151210
Ribosome biogenesis [BR:
afil03009
]
Eukaryotic type
90S particles
Helicases
140151210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_25
SRP54
AAA_7
NB-ARC
NACHT
Motif
Other DBs
NCBI-GeneID:
140151210
NCBI-ProteinID:
XP_072029572
LinkDB
All DBs
Position
1:complement(65664317..65686908)
Genome browser
AA seq
735 aa
AA seq
DB search
MSKRRLDIDDSFSKSKRRDDPDRDRDRDLDRDRDYDRDKHRSSKSNMFEQTPIKINPYTG
MPYSPRFHQILAKRSTLPVWEYKAKFVEMLNMYKVMVLVGETGSGKTTQIPQWCLEYVRG
KYPMGAKKSVACTQPRRVAAMSVAQRVSDEMDLVLGQEVGYSIRFEDCTSAKTQLKYMTD
GMLLREAMTDPLLERYGVILLDEAHERSLATDILMGLLKEVERQRVDLKVVIMSATLDAG
KFQQYFDNAPLMTVPGRTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEXEGDVLLFLTG
QEEIEEACKRLKREVDNLGPEIGELKCIPLYSTLPPQQQQRIFEPAPPNKPNGAIGRKVV
ISTNIAATSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASSQQRAGRAGRTRP
GKCFRLYTEKAYKTEMQDNTYPEILRSNLGTVVLHLKKLGIDDLVHFDFMDPPAPETLMR
ALELLNYLSSLDDNGDLTELGSMMXEFPLDPQLSKMVIASADHNCSNEILSITAMLSVPQ
CFLXPNEAKKAADEAKMRFAHIDGDHMTMLNVYHAFKQNGEDIQWCYDNFVQYRSLKSAD
NVRQQLARIMDRFALKRTSTDFNSKDYYLNIRKALVTGFFMQVAHLERTGHYLTVKDNQV
VQLHPSTCLDHKPEWVLYNEFVLTTKNYIRTVTDIKAEWLVRYAAQYYDLSNFPQCEAKR
ILERLFAKIQAKDYN
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcgccggttagatatagacgattcattctcaaaatcaaaaaggagagatgat
ccagatagggatcgagatagggacctagatcgtgacagagattatgaccgtgacaaacat
cgcagctctaaatccaatatgtttgaacagactcctattaaaatcaacccctacacaggc
atgccctattcacccagatttcaccagatcctagccaagcgtagcactctacctgtgtgg
gagtacaaagctaaatttgtagaaatgctcaatatgtataaagttatggtactggttggt
gaaactggctcaggaaaaactacacagatcccccagtggtgtttagaatatgtgagaggt
aagtatccaatgggtgctaagaaatctgtggcatgtacacaacccaggagagtggctgct
atgagtgtggctcagcgtgtgtcagatgaaatggacttagtattgggacaagaagtggga
tatagtatacgatttgaggattgtaccagcgcaaagacacaactgaaatacatgacagat
ggtatgttgttacgtgaagccatgacagaccctctcttggaacgttacggtgtgatttta
ctcgatgaagctcatgagcgatctctagctaccgatattttgatgggtttgttgaaagag
gttgagagacaaagagttgacctgaaagtagttatcatgagtgccacattagatgctgga
aaattccagcaatattttgacaatgctcctctgatgactgtgccaggccgtacccatccc
gtagagatcttttacacaccagaaccagagagagattacttggaggctgctattaggaca
gtgctacagatacacatgtgtgaggagngagaaggagatgtattattgtttcttactggt
caagaagaaatagaagaagcttgtaagcgactcaagcgagaggttgataacctaggccca
gagataggtgaactcaagtgcattccactctactcaactctgcccccacagcagcaacag
cgtatctttgaaccagcaccacctaacaaaccaaacggcgccatcggaaggaaagttgtc
atctcaacaaacattgctgcgacgtcacttaccattgatggtgttgtttttgtgattgac
ccaggattcgccaaacaaaaggtgtacaatccacgtattcgtgttgagtctctactcgta
tcacccatcagtaaagccagctcccagcagagagcagggcgtgccggtcgtacgcgtcca
ggcaaatgcttccgtctctacactgagaaagcttacaagactgagatgcaggacaacacc
tatccagaaatcttgaggtccaacttgggtactgtggtgctgcatctaaagaaactgggt
attgatgatttggtgcattttgatttcatggatccaccagcacctgagactcttatgaga
gctcttgagctgctcaactacctgagttcccttgatgacaatggtgacctaacagaactg
ggttccatgatgngcgagttccccttagacccacagctctccaagatggtgattgccagc
gccgaccacaactgctccaatgaaatcttgtcaatcacagccatgctgtcagttccacag
tgtttcctgncacccaatgaagctaagaaagcagcagatgaggccaagatgagatttgcc
catattgatggtgatcatatgaccatgctgaatgtataccatgcttttaaacagaatggt
gaagacattcaatggtgttatgacaactttgtacagtatcgatcccttaaatctgctgac
aatgtacgccagcagttggcacgcatcatggataggtttgcattgaagagaaccagcaca
gatttcaacagcaaggattactatctcaacatacgcaaagcacttgtcacagggttcttt
atgcaggttgctcatctggagaggactgggcactacttgacggtgaaagacaaccaggtt
gtacagcttcatccatccacatgcttagatcacaaacctgaatgggtcttgtacaatgag
tttgtactaacaacaaagaactacatccgtactgttactgacatcaaagcagaatggttg
gtacggtatgcagctcaatactatgacttaagcaacttcccacagtgtgaagcaaaacgt
atcctggagcgtttatttgccaagattcaagccaaggattacaattag
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