Amphiura filiformis: 140151369
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Entry
140151369 CDS
T10871
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
afil Amphiura filiformis
Pathway
afil03030
DNA replication
afil03410
Base excision repair
afil03420
Nucleotide excision repair
afil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140151369
03410 Base excision repair
140151369
03420 Nucleotide excision repair
140151369
03430 Mismatch repair
140151369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afil03032
]
140151369
03400 DNA repair and recombination proteins [BR:
afil03400
]
140151369
DNA replication proteins [BR:
afil03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
140151369
DNA repair and recombination proteins [BR:
afil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
140151369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_14
AAA_30
BRCT_2
RuvB_N
AAA_18
RNA_helicase
Rad17
AAA_33
AAA_16
AAA_17
nSTAND3
RCF1-5-like_lid
Motif
Other DBs
NCBI-GeneID:
140151369
NCBI-ProteinID:
XP_072029781
LinkDB
All DBs
Position
4:72429968..72471592
Genome browser
AA seq
1075 aa
AA seq
DB search
MDIRRFFGGGGGVASKSNGSSGSKDGKSKSGRGMTNGKRKRSIEDDDDDFEETKKTAKQS
RGKPTKSKKSTIIYDSDSDEEPPPKKKGSTPKKMKSPVVSPPSRKQQKLKTPSPSKFKPT
TVEDFFGSKPVFRSNKKTPSSSKKTEVGEPKGKKPKLEEDEDHDDVQFLETLQQLDQSNV
TPKKSKSKTEDIPSPLRRSQRSSSRNSSPARSESSQQSQESSTSNGLASKLAAKFKASKT
LIADTPEKSSTKSPHKSSKVLVEDTPVRKEEKRTRTPVKVQETPSRTTRSTPQKPSKPSS
PVKKSPQKTSPTGASPKGDGDKRRGNPGYRSYLNREGPRSLGAREIPEGEEGCLDGLTFV
ITGVLEYVEKDEAKSLVEKHGGRVTGSVSRKTSYLVVGRDGGESKMQKAQDMNVKLINEE
ELYDLIKTRPGKKGKKPEAPKPQKSTASKKPKLEARLSTPKPTQSRTESRLTDSPSSSKS
SSLPSGKTDATVSKSDSQSGECLMWVDKHKPDNTKLIIGQQGDRSPVAKLKKWLQRWQDN
NFGANKERAKNNRDEGFCFKAALLSGPPGVGKTTSAQLVCQEAGFLYLELNASDARNKKS
LDQVVSEYLHNNNIMSFFGGHKKQEEVKGHKHCLIMDEVDGMAGNEDRGGIQEMIQLIKK
SAIPIICMCNDRSHPKMRSLVTHCFDLRFQRPRVKQIQGAMMKVAYKEGIKIPPASMENI
IMAANNDIRQVLHNLSMWSAGQRQVSSEQLETDAKNAKKDLKMGPWDVLRKVFVSGEERT
KMSFIDKMDLFFHDYSIAPLFVQENYLSVVPRKAKGKVTKHLDLISKSADSLCQADLIDR
TIRSKQSWSLLPTMSVFSSVAPGEYMQGHVSGMINFPSWLGKNSTRGKNHRLLQELQMHM
RISTSTSIQDLNMGYIPHLRNFLTKPLMTGDSEGVPQVVQLLNNYDLTREDFDSILEVGH
YQGRKDPMTDVPTKVKAAFTRTYNKESHMTPYAQQQGAKKGKKGAKGGAGVEDGLLGEGE
EASQANTEEQQSDDDDVSAMIKPKKGGKGSKGADTGKGKGKAPAKGKGRAKGKSK
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggcgtttctttggcggaggtggtggtgttgcgagtaaatccaatggatca
tctggaagcaaagatggaaagagcaagtctggtcgaggaatgacaaacggcaaaaggaag
cggtcaatagaggatgatgatgatgacttcgaggagactaagaaaacagcaaagcagtcc
agaggaaaaccaaccaagtcaaagaaatccactatcatttatgattcagattcagatgaa
gaaccaccaccaaagaagaaaggatcgacaccaaagaagatgaaatcaccagtggtatct
cctccatcaaggaagcaacagaaactgaagactccatcaccgtccaagtttaagccaact
acagtggaagatttctttggctctaaaccagttttccgatctaacaagaaaacgccatcg
tcaagtaaaaagacagaggttggcgaaccaaagggcaagaagcccaagctggaagaggat
gaagaccatgatgatgtacagttcctagagacactacagcagctggatcaaagcaatgtt
actccaaagaaatcaaaatcaaaaacagaggacataccttcgcctttacgaagaagtcaa
aggtcatcatcaaggaattcaagtccagctagatcagaaagcagtcagcagtcacaagag
agtagtactagtaatggactggctagcaaactggcagctaagttcaaagcctctaagacc
ctgattgcagacacaccagagaagtcctcaaccaaatcaccacataagtcttccaaggta
ctggtagaagacacacctgtaaggaaggaagaaaagagaacaagaacaccagtcaaggtc
caggaaactcctagcagaacaactagatccacacctcaaaaaccaagtaaaccatcaagc
ccagtgaagaagtcaccccagaagacatcaccaactggtgcttcgcccaaaggtgatggg
gataagcgtagaggtaaccctggttacaggagttatctgaatagagaaggtccaaggtca
cttggggctagagagataccagagggggaggaaggttgcctagatggtcttacctttgtc
atcactggtgtgttagaatacgtagagaaagatgaagctaaatcactggtggaaaaacac
ggaggcagagtaacaggcagtgtgagcaggaagactagttacctggttgtgggaagggat
ggcggagagtctaaaatgcaaaaggcacaagatatgaatgttaagcttattaatgaagag
gagttgtatgatctgattaaaaccagaccgggcaagaaaggaaagaaaccagaagcgcct
aaaccacagaagagtactgcatccaaaaagccaaagctggaggccagactgtctactcca
aaacccacacaatcaagaactgaatccagactaacagactctccttcatcaagtaaatcc
tcatcattaccatctggcaaaactgatgccacagtatcaaagtctgatagccaatcagga
gagtgtttaatgtgggtcgataaacacaaacctgataatacaaaacttatcattggacaa
caaggagacagaagtccagttgccaaattaaagaaatggttacaaagatggcaggataat
aattttggtgcaaataaagaaagagccaagaataaccgtgatgaagggttctgcttcaaa
gcagctctgctgtctggtcctcctggtgtaggaaaaacaacatctgcacaattagtgtgc
caggaagctggtttcctgtacctagaacttaatgccagtgatgcaagaaataagaagagt
ctcgatcaagttgtatcagaatatctacataacaataatattatgagcttctttggaggt
cacaagaaacaggaagaggtcaagggtcataagcattgcttgataatggatgaggtggat
ggaatggctggaaatgaagacaggggaggcattcaggagatgatccagctgatcaagaag
tccgcgatcccaatcatttgcatgtgcaacgatcgcagtcatcccaagatgaggtcgctt
gtcacccattgctttgatctcagattccaaaggccaagagttaaacaaattcagggagct
atgatgaaagtagcctacaaagaaggaatcaagattccaccagcatcaatggagaatatt
ataatggctgccaacaatgatattagacaggtgttacataatcttagcatgtggagtgca
ggacagagacaagtgagcagtgaacaactggagacagatgctaaaaatgcaaagaaagat
ctcaagatgggtccatgggatgtgttgcgtaaagtgtttgtatccggtgaagagagaact
aagatgtcatttattgacaagatggatctattctttcatgactactctatagcaccacta
tttgtacaagaaaactacctgagtgttgtcccaagaaaggcaaagggtaaagttaccaag
catctagatttgattagcaaatcagctgatagtttatgtcaagcagacctcattgatagg
accatcagaagcaaacagagttggagtctgcttccaacaatgtctgtgttttctagtgtg
gcacctggagagtacatgcaaggccatgttagtggtatgattaatttcccaagctggtta
ggaaagaattcaacgagaggcaaaaaccacagactactgcaagaattacagatgcacatg
aggattagcacttccactagcattcaagatctcaacatgggctatattccgcacctacgc
aacttcctaaccaaacctctgatgacaggggacagcgagggcgtgccacaagttgtacaa
cttctcaacaattatgatctgacaagggaagactttgacagcatcttggaagttggtcat
taccaaggaagaaaagacccaatgactgatgtaccaacaaaggtgaaagcagcattcaca
agaacgtacaacaaagagtctcacatgacaccatatgcacagcaacaaggagctaagaaa
ggcaagaaaggtgccaaagggggtgctggtgtagaagatgggttgctaggtgaaggagag
gaagcaagccaggctaatactgaggagcaacagagtgatgatgatgatgtcagtgctatg
attaagccaaagaaaggaggtaaaggaagtaaaggagcagatacaggaaagggaaaagga
aaagcaccagcaaagggcaaaggtcgtgccaaaggaaagtcaaaatga
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