Amphiura filiformis: 140152504
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Entry
140152504 CDS
T10871
Name
(RefSeq) uncharacterized protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
afil Amphiura filiformis
Pathway
afil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140152504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afil03041
]
140152504
03009 Ribosome biogenesis [BR:
afil03009
]
140152504
Enzymes [BR:
afil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140152504
Spliceosome [BR:
afil03041
]
Complex A
U1 snRNP components
U1 related factors
140152504
Complex B
140152504
Ribosome biogenesis [BR:
afil03009
]
Eukaryotic type
Pre-60S particles
Helicases
140152504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF2443
Motif
Other DBs
NCBI-GeneID:
140152504
NCBI-ProteinID:
XP_072030941
LinkDB
All DBs
Position
5:4023613..4041415
Genome browser
AA seq
643 aa
AA seq
DB search
MSAMASVSVRTICSLNRTFSKLLISSPKAPVAGLSSSCSRLCSQQVPVGEEDVDSSRYRV
IEPLINTDATERERSEDGEFRRKGEWGMDRKRTWWQDDEDSDFTSHRKRQNDWPDRRPNR
SFEHSKRFVESSWGSRVAGRSRGRDMFDDQDSLREPHWDEMTLTPFEKNFYNEHPDVVNR
TEEEIDEFRSSKDITVRSRNVNTPRPVFKFSEANFPDYLIQEARKHNLEDPTAIQAQGWP
VALSGENMVGIAQTGSGKTLAFILPAVVHINHQPELQPGDGPIVLVLTPTRELAQQVQQV
SFQYGRTSGIRSTCVYGGAARGPQYRNLKRGSDIVIATPGRLIDFLQEGATNLHRCTYVV
LDEADRMLDMGFEPQIRTIMEQIRPDRQVLMWSATWPKEIRALAEDFLKDYTMINIGSMN
LSANPNITQVIKVCEEQEKFDVFFDLLDTIKKETEKKTIVFVETKRKVDRLYYQLRDAGV
PVVSIHGDKSQGQRDMALKDCRSGRRPVLIATDVAARGLDVTDIKFVINYDFPNVVEDYI
HRIGRTARHEKTGTAYTLFTQENASLARKLLEVLKETNQEISPEFLAMAASSNRGGGGKK
GYSRNNRWGSRNNRYGNRDRYDRNRPRRNSYHESETDDYSWGN
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaatggcgagtgtgagtgtgagaacgatttgttcattgaatcggacgttttct
aagcttttaatctcgtcaccaaaagcgccagtagcaggtttatcttcctcgtgttcaagg
ctctgttctcagcaagttccagtcggagaagaggatgtggattcgtctcgatatcgcgta
attgaaccgttaataaacacagacgccacagaaagagaaagaagtgaagatggtgaattt
agaagaaagggagaatgggggatggacaggaaaagaacttggtggcaagatgatgaggac
agtgattttacaagccataggaaaagacaaaatgattggcctgacagaagacccaacaga
agttttgaacattcaaagagatttgtagagagttcatggggatccagagttgcaggcaga
agtaggggtagggatatgtttgatgaccaagattcattaagagagccacattgggatgag
atgacactcacaccttttgagaagaatttctacaatgaacatccagatgtagtcaatagg
acagaggaagagattgatgaatttcgtagcagcaaagacattacagtaagaagtagaaat
gtgaacacaccaagaccagtgttcaaattcagtgaagccaatttcccagactatttgata
caagaagctagaaaacataatttagaggatcctacagcaatccaggcacaaggctggcca
gtggcactgagtggtgaaaacatggtaggaatagcacagacaggatcaggaaaaactcta
gcatttattttaccagcagtagtccatattaatcaccagccagaattgcagccaggtgat
ggtccaattgtattagtgttaacaccaacacgtgaattagcacaacaagtgcaacaagtt
tcattccagtatggcagaacctctggtatcagaagtacatgtgtgtatggaggtgctgct
aggggaccacaatacagaaacttgaaaagaggttcagatattgtgattgcaactcctggt
cgtctgattgacttcttacaagagggcgccaccaatctacatagatgtacttatgtcgtt
ttagatgaagctgacagaatgttggatatgggatttgaaccacagattagaactatcatg
gaacagattaggccagacagacaagtattgatgtggagtgctacatggccaaaggaaatc
cgagctctagcagaagacttcttgaaggattacactatgatcaatattggttctatgaac
ctatcagctaacccaaacataacacaagtcattaaagtgtgtgaagaacaagagaaattt
gatgtgttttttgacttgcttgacaccatcaagaaagaaacagaaaagaagacaatagtg
tttgtagaaaccaaaaggaaagtagatagactttactatcaactacgcgatgctggtgta
ccagttgtttcaatacatggtgataagtcacagggtcaaagggacatggctttgaaagat
tgccggtctgggagaagacctgtattgatagcaacagatgttgcagcaagaggtttagat
gtgacagatatcaagtttgttatcaactatgactttcctaatgttgttgaagactacatc
catcgcataggtcgtacagctagacatgaaaagacaggcacagcatacacactgttcaca
caagagaatgcaagcttagctaggaaactgctggaagtattgaaggaaactaatcaagaa
attagcccagaatttttagctatggctgcaagtagtaatagaggaggtggaggtaaaaaa
ggatattcaaggaacaacagatggggctctaggaataatagatatggcaacagagataga
tatgataggaatagaccaagaaggaactcatatcatgagtcagagactgatgattatagc
tggggaaattaa
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