Amphiura filiformis: 140152702
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Entry
140152702 CDS
T10871
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
afil Amphiura filiformis
Pathway
afil03013
Nucleocytoplasmic transport
afil03015
mRNA surveillance pathway
afil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140152702
09122 Translation
03013 Nucleocytoplasmic transport
140152702
03015 mRNA surveillance pathway
140152702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140152702
03041 Spliceosome [BR:
afil03041
]
140152702
03009 Ribosome biogenesis [BR:
afil03009
]
140152702
03012 Translation factors [BR:
afil03012
]
140152702
Enzymes [BR:
afil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140152702
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140152702
mRNA cycle factors
Stress granule specific factors
140152702
Spliceosome [BR:
afil03041
]
Complex C
Other components
EJC/TREX
140152702
Ribosome biogenesis [BR:
afil03009
]
Eukaryotic type
90S particles
Helicases
140152702
Translation factors [BR:
afil03012
]
Eukaryotic type
Initiation factors
eIF-4
140152702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
AAA_30
TniB
Motif
Other DBs
NCBI-GeneID:
140152702
NCBI-ProteinID:
XP_072031262
LinkDB
All DBs
Position
5:14912447..14936501
Genome browser
AA seq
402 aa
AA seq
DB search
MANLKTGRRVIPGNSTIRFETSEGVDVIPTFDAFNFRDELLRGVYAYGFEKPSAIQQRAI
KPVIKGRDVIAQAQSGTGKTATFSISILQCLDTQVRETQALILSPTRELAGQIQKVILAL
GDYMSVQVHCCIGGVSIGEDIRKLDYGQHVVSGTPGRVFDMIKRRHLRTRSIKMLVLDEA
DEMLNKGFKEQIYDVYRYLPPATQVVLFSATLPHEILEMTEKFMTDPVRILVKRDELTLE
GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHG
DMPQKEREAIMKEFRGGASRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSG
RYGRKGVAINFVKSDDIRILRDIEQFYSTQIDEMPMNVADLI
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggccaacctgaaaacggggagacgcgtgattccagggaattcgacgatacgttttgaa
acaagtgaaggggttgatgtgatccctacatttgatgcttttaactttagggatgaactt
ttaaggggagtctatgcgtatggttttgagaagccatcggcaattcaacagagagccatc
aaaccagtcattaaaggaagagatgtgattgcacaggctcagtcaggtacagggaaaaca
gccacattctccatctcaatattacaatgtttggatacacaggtgcgagagacacaagct
ttgatcttgtcaccaacacgagagttggctggtcaaattcagaaggtaattcttgcatta
ggtgattacatgagtgtacaagttcattgctgtattggaggcgtcagtattggagaagac
atcaggaagttagactatggacagcacgtagtatcaggcacaccagggagagtctttgat
atgatcaaacgaagacatctgagaacacgatccatcaagatgctggttttggatgaagct
gatgagatgttaaacaaaggtttcaaagaacagatctatgatgtgtaccgatatctgcca
ccagcaacacaagtagtcctcttcagtgccaccctaccacatgaaatcttagaaatgaca
gagaagttcatgacagatcctgttcgcatcttggtcaaacgtgatgagttgacactagag
ggcatcaagcaattctttgtagccgtggagagagaggagtggaagtttgacacattgtgt
gacttatacgacacacttaccatcacacaagctgttatattctgcaatacaaaaagaaag
gttgactggttgacagagaaaatgagagaagccaactttacagtatcatccatgcatggt
gacatgccacagaaggaaagagaagccattatgaaagaattcagaggtggagcaagccga
gtgctgatcacaacagacgtatgggctcgtggtattgacgtacagcaagtgtcattggtt
atcaactatgatctacccaacaacagagagttgtacattcacaggattggccgttcaggt
cggtacggacgcaagggtgtagccatcaactttgtgaagagtgatgacatcaggatcctg
agagacatagagcagttctacagcacacagattgatgaaatgcccatgaatgttgctgat
ttgatataa
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