Amphiura filiformis: 140152860
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Entry
140152860 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin-like
KO
K06100
symplekin
Organism
afil Amphiura filiformis
Pathway
afil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140152860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afil03021
]
140152860
03019 Messenger RNA biogenesis [BR:
afil03019
]
140152860
Transcription machinery [BR:
afil03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140152860
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
140152860
U7-dependent histone pre-mRNA processing factors
140152860
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_MROH2B_C
Motif
Other DBs
NCBI-GeneID:
140152860
NCBI-ProteinID:
XP_072031485
LinkDB
All DBs
Position
5
Genome browser
AA seq
1272 aa
AA seq
DB search
MSEESSSSRRSVAGQFFTEDEGTESSANTTSEKVVELINQTQLLTKDNQKLANLKQVQEL
IVNKEPALLDNFLDEVLQFQHDKSADVRRFVIGFMEERGNKKDNEILCTVAPNLNMMLSD
PEQHIIVTKKVILCNAQLLKVTVKWLITAKRVGDEMVDVWDIMWEMRDKIVTMLDSENDG
IRTHAIKYVESAVIMFSVRTPDSEVPKKAEGDASLDQIPDEHKCLQASKLRGEGINCLDQ
LLKLLASPSITSVNLTACMGALTTISKQRPAFMSRVITAFETLHVNLPPTLAKSQVSSVR
KSLKLQLFSLLRLPSSADIRPNIKLLLNDLGATDNEIAKNLPRVSSSSKRPRQDDDNDKG
RSSKKTKTSKAIGKILDEEDEPTTSSRGRSTPTQVASKPTTTVVKPVTKLTMVDILSEEI
QPLLGIVENVANLVLISMVTLPETMPPQFQATYTPIAAAGTGNQINHLARMMSSQFVAAG
VKPKDSEKLALIEEANQEKKEEPKPSKPEIRGISVVGAGEESSGKKKPTQTQVSKGVKRI
KQFRLNEITKPLEPEVASDLVTTAIKRIIEAGKASKHGGAAKDRVKILTALATQFGGDLT
EVLREYMLEDLRSNSDIAFAWLYQEYANLRGYIPQFSEEDVGIERYDHLLCAMLDSLLTR
SDQRDGLFTRLVMEAPIITDNAIKVIRKFCEDEVHFFSGMHALRELILKRPADIQNYLME
LLDLTYHERTEVRSQSIQYVKRLYDRQDLRDTIETYATGCLKTLLKPSPTPQLIERLSSA
EDQRLAHKTWIEECIKMCLYLYLALLPVNHKLIHELANVYVDTGSPIKRIVLRVLEAPVR
GIGMSSPELLKFVENCPKGAETLVTRMLHILTDKAPPSPDLVKRVRDLYNRRVSDVRFLI
PVLIGLEKTEVIEALPKLIKLNPGVVKEVFHRLLMSHQGDNSAGQSPLTPAELLIALHNI
DSAKCDMKSIIKATSLCFNEKNIYTQEVLAVVLQQLMEQTPLPILLMRTVIQSLTMYPKL
SGFIMNILRRLIEKSVWTQPKVWEGFIKCCERTQPQSYQVLLQLPPPQLRSVFSMSPGLR
KPLLEHVRSFTEHQQAHIPAPILKILEAEDSGDRTLHEKQAIRHRLEPVQRRGSEDSSQN
LQKTKLLQDKLNQEKRLQEPQWKEKLEKEKRMREEEMRRKEKRDAESEERKRRKESDSRD
REDSKRRRSNNGRGSDSPSMRIKQEPIDPDDQPSHSPSVRIKQEPIDPDDQRSEKSDEGR
PSKRRSSRLSKS
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagaatctagcagtagccggcgatctgtcgctgggcaatttttcacggaagat
gaaggaactgaaagtagtgctaacactacttctgaaaaggttgtggaattgattaatcaa
acccagttgctgacaaaggacaatcagaagcttgctaacttgaagcaggtgcaagaactt
attgtcaacaaggaaccagctttgttggataatttcttagatgaagtacttcagtttcag
catgacaagtctgcagatgtcaggaggtttgttattggtttcatggaagagcgtggtaac
aaaaaggacaatgagattctgtgtacagttgcacctaatctgaacatgatgttgagtgac
cctgagcaacacataatagtcaccaagaaagtcatactgtgcaatgctcaacttcttaaa
gtaacagtcaagtggttgataacagccaagagagtgggggatgaaatggtggatgtatgg
gacatcatgtgggagatgagggacaagattgtcaccatgctggactcggaaaatgatggg
atacggactcatgctatcaagtatgtggaatctgcagttattatgttctctgtgaggacc
cccgactcagaggtgcctaagaaggcagaaggtgacgcatcactggatcagataccggat
gagcacaagtgtttacaggcttctaagttacgtggtgaagggattaactgcttagaccaa
ctgcttaaactgttagcatctcccagtatcacaagtgtgaatctgacagcttgtatggga
gctctgactaccattagtaaacaacgtcctgcatttatgtcaagggtcatcacagcattt
gaaacactccatgtaaacttgcctccaacattagccaagagtcaagtgagcagtgttaga
aagagtttaaagttgcagttgttcagtttgctgcgtttgccgtcctctgcggatatccgg
ccaaacataaaacttctgttgaatgacttgggagctacagacaatgagattgccaagaac
ttacctcgtgtgtctagcagtagcaagaggcccagacaggatgatgataatgacaaaggg
cgtagtagtaagaagacaaaaacaagcaaggcaattggcaagatcctagacgaagaggat
gaacctactacatcaagtcgaggacgctccacacctacccaagtggccagtaaacctacc
accactgtagtgaaacctgtcaccaagctgaccatggttgatatattgtctgaggagatc
caaccactcttggggattgtggaaaatgtagcaaacttggttctgattagtatggttacg
ttaccagagacaatgccgcctcaattccaggctacctacacaccaatagcagcagcaggt
acaggcaatcaaatcaatcatttagccaggatgatgagtagtcagtttgtagcagctgga
gtgaaaccaaaggattcagagaaacttgctctaatagaagaagccaaccaggagaagaag
gaggaacctaaacctagcaagcctgaaattagaggaatatcagtagttggtgcaggggaa
gagagtagtggtaagaagaaacctacccagacccaagtgagtaagggagtgaaacgtatc
aaacagttccgattgaatgaaatcaccaagccattggagccagaagtggccagcgattta
gtcaccactgccatcaagagaatcattgaagctggaaaagcctccaaacatggtggtgct
gctaaagatagagtcaagatcctaacagctttagccactcagtttggtggagatctcaca
gaggttttgcgagaatacatgttggaagacttgcgtagcaacagtgacatagcgtttgcc
tggttgtatcaggaatatgccaacttacgcggatacattccacagttttcggaagaagat
gtgggtattgagagatatgatcatttactgtgtgcaatgctggatagtttactgactagg
tcagaccaaagagatgggttatttactaggctagtgatggaagcaccaatcatcacagat
aacgccatcaaagttattaggaaattctgtgaagatgaggtgcatttctttagcggtatg
catgcattgagagagctgatattgaagagacctgccgatatccagaattacctaatggaa
ctgctagaccttacataccatgagaggacagaagtacgctcacaatccatccaatatgtc
aagaggctgtatgatagacaagatctcagagatactattgagacatatgcaacagggtgc
ctgaagaccttgctgaaaccaagtccaacgcctcaactgatagagaggctctccagtgca
gaagatcaaagattggctcataagacctggatagaagaatgtattaagatgtgtctgtat
ctctacctggccttactgcctgttaatcataaacttattcatgagttagccaatgtgtat
gttgacactggatcaccaatcaaaagaattgtactacgggtcttagaagcaccggttcga
ggtataggtatgtcctctccagagctgctgaaatttgttgaaaattgtcctaaaggagcc
gaaacattagtgacaagaatgctgcatattttgacagacaaagcgccaccgtcaccagat
ctggtgaaacgagtccgtgacttatacaacaggcgagtgtcggatgtacgcttcttgatt
ccagtactcataggactagaaaagactgaagtaatcgaggcattacctaaactgattaag
ctgaacccaggggtagtgaaagaggtgttccacagacttcttatgagccatcaaggagat
aacagtgcaggacagagccctctaacaccggctgaattacttattgcacttcataatatt
gacagtgctaagtgtgatatgaagtccattatcaaagctaccagtttgtgcttcaatgag
aagaatatctacacccaagaggttcttgctgttgtgctgcagcagttaatggagcagact
ccactaccaattctgttgatgagaactgttatacaatccctcaccatgtacccaaagctg
agtggcttcatcatgaacatcttacgaagattaattgaaaagagtgtttggacccagccc
aaagtctgggagggattcatcaaatgctgtgagcgtactcagccccagtcataccaagtg
ttgttgcagcttcccccacctcaactcagaagtgtcttctcaatgagtcctggtctaagg
aaaccactcttggagcatgtcaggtcctttacagaacaccagcaagcgcacattccggca
ccaatactaaaaatccttgaggctgaggattctggagataggaccctccacgaaaagcaa
gcgatacgacacaggttggaaccagtccaaagaagaggttcggaagactccagccaaaac
ttgcagaagacaaaactccttcaagataaactgaaccaagaaaaaagattgcaagaacca
cagtggaaggagaaattagaaaaggagaaacgcatgagagaagaagaaatgaggagaaaa
gaaaaaagggatgctgagagtgaagaaaggaagaggagaaaagaatcggattcaagagat
agagaggactcaaaacgaaggagatctaacaatggtagagggtctgactccccgtctatg
agaataaaacaagaaccaatagatccagatgatcagccttctcacagcccttcagttcgt
atcaaacaagagcctatagatccagatgatcaaaggtcagagaaaagtgatgaaggacgt
ccatcaaaaaggagaagctccagattaagcaaaagctaa
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