Amphiura filiformis: 140153576
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Entry
140153576 CDS
T10871
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
afil Amphiura filiformis
Pathway
afil03022
Basal transcription factors
afil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
140153576
09124 Replication and repair
03420 Nucleotide excision repair
140153576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afil03021
]
140153576
03036 Chromosome and associated proteins [BR:
afil03036
]
140153576
03400 DNA repair and recombination proteins [BR:
afil03400
]
140153576
Enzymes [BR:
afil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
140153576
Transcription machinery [BR:
afil03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
140153576
Chromosome and associated proteins [BR:
afil03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
140153576
DNA repair and recombination proteins [BR:
afil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
140153576
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
DEAD
ResIII
AAA_11
nSTAND3
YuaE
Motif
Other DBs
NCBI-GeneID:
140153576
NCBI-ProteinID:
XP_072032459
LinkDB
All DBs
Position
5:complement(66660757..66705788)
Genome browser
AA seq
761 aa
AA seq
DB search
MKLNVDGLLVYFPYDYIYPEQYMYMVELKRALDAKGHCVLEMPSGTGKTVSLLSLIVAYL
RTNPSEVTKLVYCSRTVPEIEKCLEELKTLTEYYEKETGEAPNILGLALSSRKNLCIHPS
VSKERLGKAVDTRCHQLTASHIRSRRQHDPTIPGCSFFEEFDSFGRESPLPAGIYSLDDL
KDRGRQNGWCPYFIARYAIFHANIIVYSYHYLLDPKIAELVSKELSRKSVVVFDEAHNID
NVCIDSLSVHISRKTLEKCQTNLEALKQQIERIKATDAERLKREYERLVEGLRDASAARA
TDVQLANPVLPDEILQEAVPGNIRNAEHFIAFLKRFVEYLKVRLRVQHVVSESPASFLKD
TFSKVCIDRKPLRFCAERLHSLLRTLELTDIQDLSPVTLVSNFATLVSTYTKGFSLIIEP
FDDKTPTIPNPVLHFSCMDASIAIKPVFDRFQSVIITSGTLSPLDMYPKILDFRPVTMAS
FTMTLARNCICPIIVGRGNDQVAMTSKFESREDIAVIRNYGNLLVELSSIVPDGIVCFFT
SYVYMESIVANWYEQGIIDNIQKNKLLFIETQDAAETSVALYNYHRACENGRGAILLSVA
RGKVSEGIDFDHHYGRAVIMFGIPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAMRGKTDYGVMVFADKRFGRSDKRGKLPKWIQEYMKDSLCNLTTDESVQICKKF
LRQMAQPFKHEDQLGLSLLTLEQLESAEMRKKLEQTTHIIQ
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgaatgtggatggattattagtgtacttcccatatgattatatctacccagag
caatatatgtacatggtagagttgaaacgagctctagatgccaagggtcactgcgtactt
gagatgccttcagggacagggaagacagtctccctactatcgctgattgttgcatatctg
aggacaaacccatcggaggtcactaagcttgtctattgctctcgcacagtgcctgagata
gaaaagtgtcttgaggaacttaaaacgttgacagaatactatgaaaaggaaacaggagaa
gcaccaaacattttgggtcttgccttgagttcacgcaaaaatctctgcattcatccatcg
gttagtaaggagcgacttggcaaagcggttgacactcgttgtcatcagctgacagcatct
cacattagatctagacgtcaacatgacccaacaatacctggatgctcattctttgaggag
tttgattcctttgggagggagtcccctttacctgctggtatttatagcttagatgatctt
aaagatagaggcagacaaaatggctggtgtccctatttcatagcaagatatgctatattc
catgccaatatcattgtgtatagttatcactatctgttagatcccaagattgccgagctg
gtatccaaggagttgtcacgcaagtcagtggtagtctttgatgaagctcacaatatagat
aatgtgtgcatagattcattaagtgtgcatatatcaagaaagacactagagaaatgtcag
accaacttggaagcacttaaacaacagatagagagaatcaaggccactgatgcggagaga
ttaaagcgggaatatgaaagattagtggaagggttaagagatgcaagtgcagcaagggca
actgatgtacagctagccaacccagttttacctgacgaaatattgcaagaagctgtgcca
ggaaacattcgcaatgcagaacattttatcgcctttttgaagagatttgtggagtacctc
aaggtcaggttacgggtccagcatgttgtttcagagagtcctgcgtcattcctgaaggac
acattcagtaaagtgtgcatcgacaggaaacctctgaggttttgtgctgagagattacat
tctttgctgaggacattagagttgacagacatccaggatttatctccagtcacactggta
tcaaactttgctacacttgtcagtacttacacaaaaggtttcagtttaatcatagagcca
tttgatgataagacaccaaccataccaaacccggtgctccatttcagttgtatggatgcc
tccattgctatcaaaccagtatttgatagattccaatctgtcattattacctcagggacc
ctttcacctcttgacatgtatccaaagattcttgactttcggcccgttaccatggcatct
ttcacaatgacactggcaaggaactgtatctgtccaattattgttggtagaggcaatgac
caggttgcaatgacatccaaatttgagagcagagaagatattgctgtgattcgtaactat
ggtaaccttcttgtggagttgtcatcaatagtgcctgatgggattgtgtgctttttcaca
agttatgtctatatggaatccatagtagctaattggtacgagcaaggcatcatagacaac
atccagaagaacaagttgctattcattgagactcaggatgcggcagagaccagtgtagca
ttgtataactaccacagggcttgtgaaaatggaagaggagccatcttactctctgttgct
aggggcaaagtatccgagggaattgactttgaccaccattatggaagagctgtgatcatg
tttggcatcccatatgtatacactcaatcacgtatcttaaaggctcgcttagaatacctc
agggatcagttccagatcagagaaaatgatttcttgacatttgatgccatgagacatgct
gctcagtgtgttggtcgagctatgagaggaaagaccgactatggtgtcatggtgtttgca
gataagagatttgggagatcagacaagcgtggcaagctgcccaagtggatccaagaatac
atgaaggatagcctgtgtaatctcacaacggatgaatccgtacagatctgtaagaagttt
ctcagacagatggcacagcccttcaagcatgaagaccaacttggcttgtcacttctgacc
ctggagcaactggaatcagcagaaatgaggaaaaaactggagcaaacaactcacataatc
cagtaa
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integrated database retrieval system
