Amphiura filiformis: 140154060
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Entry
140154060 CDS
T10871
Name
(RefSeq) DNA polymerase lambda-like
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
afil Amphiura filiformis
Pathway
afil03410
Base excision repair
afil03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
140154060
03450 Non-homologous end-joining
140154060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afil03400
]
140154060
Enzymes [BR:
afil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
140154060
DNA repair and recombination proteins [BR:
afil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
140154060
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
140154060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_8
BRCT
BRCT_2
NTP_transf_2
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
140154060
NCBI-ProteinID:
XP_072032777
LinkDB
All DBs
Position
1:complement(78753100..78824907)
Genome browser
AA seq
601 aa
AA seq
DB search
MSSQPSKKRKGKEEQKASSNKKQKTNSTLTEETNQTGIFSNLVLYILQAGIGKARAEIFS
KQVAKFSGKLQNNLSPDVTHLIVDEQMDIDRLCRILKIDEPPFDVKIVKASWISNCLSEQ
KVVSTEEHEIKIPVKYLKTNDSNLGSESNVNREPKKLDDTSSCKKTEELESAGTKKHADG
EGKPQDIPSTSVSDKEAVLTREDVNIHWRSPTKKGDVDDSDDSSYIPSDDDDEDQQSRAP
SGQSSSNASTPNASPAKLPKGNWVCSRPSSSIVVNHNKLITDKLEVLLKVYENTRDRWRA
LSYKKAISALSRHPKAITSWQEANEIPGIGKALADKVWEIARTGHLRKIDHVCKGEEMEA
LNLFNNIWGVGPTVSQEWVQQGLRTLDDVREKAKLNYQQEIGMKHYDDFLERMPREEAGQ
IERTVREMAQTIHPKMLAVVCGSYRRGKQTCGDVDVLISHPDNKSHKGVLPKLLDKLRKT
GFITDDLIRVEEEVGEQRKYMGVCRLPGENTKYRRIDIIVAPYSEYPCALLHFTGSGHFN
RSMRALAKKKGMSLSEHALCTGVVRSGTVKINKGTSLPVNSEEDVFRYLGLEYRDPEERD
H
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgcaaccatcaaagaaacgtaaaggtaaagaggagcaaaaagcatcatctaac
aaaaaacaaaaaacaaattcaacattgacagaggaaacaaaccaaactggtatcttctcc
aatctggttctatacatacttcaggctggaattggcaaagcccgtgctgagatatttagt
aagcaagtggcaaaatttagtgggaaattacaaaataacttatctcctgatgtaacccat
ttgattgtagatgaacaaatggacattgatagattgtgtagaatcttaaaaattgacgaa
cctccttttgatgtgaaaattgtgaaagctagttggatcagtaattgcttgtctgaacaa
aaagttgtatcaactgaagagcatgaaataaagatcccagtgaaatatctaaaaacaaat
gatagcaacttgggaagtgaatctaatgtaaatagagaaccaaagaagttggatgatact
tcttcatgcaagaaaacggaagaactagaaagtgcaggtaccaaaaaacatgcagatggg
gaggggaagccacaagacattccatcaacatcagtgtcagacaaagaggcagttttaaca
agagaagatgtgaacattcattggagaagtccaacaaagaaaggtgatgttgatgatagt
gatgatagcagttacataccaagtgatgatgatgatgaggatcagcaatcccgggcacca
tcaggtcaaagttcatccaatgcttctactccaaatgcatcgcctgcaaaattacctaaa
ggcaattgggtgtgttccaggccgtcatcgtcaattgttgtcaatcataacaaactcatc
actgacaaactagaggttctattaaaagtgtatgaaaacaccagagatcgatggcgagct
ttgagttacaaaaaagccatatcagccttgtcaagacatccaaaagcaatcaccagttgg
caggaagccaatgagattccaggaatagggaaagcccttgcagacaaagtgtgggaaata
gcccgtactggacatctaagaaagattgatcatgtttgcaaaggagaagaaatggaagca
ttaaatctatttaataacatctggggagttggtcctactgtatcacaagaatgggtgcaa
cagggtctgcgtacacttgatgatgtccgtgagaaagccaagctgaattatcaacaagaa
attggtatgaaacattatgatgatttcctggagaggatgcccagggaagaagctgggcaa
atagaaaggacagtgagagagatggcccagactattcatcccaagatgttagcagtggtc
tgtggttcttacagacgaggcaagcagacttgtggagatgttgatgttctcatcagtcat
cctgataacaagtcacataaaggagtattgcctaagttattggacaaactcagaaaaaca
ggcttcatcaccgatgaccttattcgagttgaagaggaggttggtgagcaacggaagtat
atgggagtatgtagattgccaggagaaaacacaaagtatcgtcgtattgacatcatcgta
gcgccatacagcgaatacccgtgtgcattactccatttcacaggctctggacattttaac
cgatcaatgagggcgctagcaaagaaaaagggaatgtcactttcggagcatgcattatgc
actggcgtcgtccgaagcggaaccgtgaaaattaacaagggaacatcattaccagtcaac
tcagaggaagatgtatttagatacctcggattagagtaccgtgatcccgaggaacgagat
cactaa
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