Amphiura filiformis: 140154825
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Entry
140154825 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
afil Amphiura filiformis
Pathway
afil03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
140154825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afil03021
]
140154825
03036 Chromosome and associated proteins [BR:
afil03036
]
140154825
Transcription machinery [BR:
afil03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
140154825
Coactivators
SAGA/TFTC/STAGA complex
140154825
Chromosome and associated proteins [BR:
afil03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
140154825
STAGA complex
140154825
TFTC complex
140154825
SAGA complex
140154825
SLIK complex
140154825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
TFIID_NTD2
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_HPS5
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_VPS8
Tricorn_2nd
Beta-prop_SPT8
PEP5_VPS11_N
Beta-prop_ELP1_1st
Beta-prop_WDR19_1st
Beta-prop_Vps41
WD40_like
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
PROPPIN
Motif
Other DBs
NCBI-GeneID:
140154825
NCBI-ProteinID:
XP_072033514
LinkDB
All DBs
Position
6:3164193..3192766
Genome browser
AA seq
681 aa
AA seq
DB search
MPSSDQVKDEDRAVDKQTLAAVLQFXKKNNLKGTEELLRKEANIQEGEEGDASSNNDQEV
SSVLSAYTSEGDPSLYEDYYNGLERFVESSLDAHKSELCQILYPVFVHMYLELVYNDHEM
QAKSFFDAFSKDQEEYHQEDLQRLAMVFKKEHMKHNELMISFRTSKYVIRMSRDSYQSLK
RHLQDRQNHAVLTIVQEHLFVDVFDGLPRSKQQIDATAGGMVGEAKREANKSKVFYGLLK
EPEINIPLDDGDEEMDGEGKPKKKKPKKDLSAKSKKPDPNAPPQNRIPLLEMKDSDKLEK
RIAMRELSKRVRLSPDCLPSICFYTCLHAHQGLTSLDISDDSSLMAAGFADSVIRLWTLT
PKKLRGMKSSLDLGYLDIESDDILERIMDDRSASDFRVLHGHSGPVYGTSFSPDRSFLLS
SSEDGTVRLWSLFTYSNLVCYKGHNYPVWDVQFGPYGHYFATAGMDRTARLWSTEHFQPL
RIFAGHFSDVDVVRFHPNSNYLATGSSDRTIRLWDISNGKCVRIMTGHKGSIHSLAFSPN
GHYLASTGEDKRVLIWELRHGSLVGELTGHNDTVYSMCFCRDGHLLATGGLDNSVKLWDI
KKVFAEVDSDDMATTPQIVQSEKSNILLGSYPTRHTPVHHLHFTRRNLLMASGPYLPPPS
ASSSHTTTSSATITTTSALAH
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgtcagatcaagtcaaagacgaggacagagcagtagataaacaaacgcttgca
gctgttttgcaatttntgaaaaagaacaatttgaagggaactgaggaacttctgagaaag
gaagctaacatccaagaaggggaagaaggagatgccagttcaaataatgaccaagaagtc
tcatctgtattgtctgcatatacaagtgaaggagacccatccctgtatgaagattactat
aatgggttggaaagatttgtggagagttccctagatgctcacaagagtgagttgtgtcaa
attttatacccagtttttgttcacatgtacttggagttggtgtacaatgaccatgaaatg
caagccaagtctttctttgatgccttcagcaaggatcaggaggaataccatcaagaagat
ctacaaagacttgccatggtgttcaaaaaagagcacatgaaacacaatgaactcatgata
agcttcaggaccagtaaatatgtgatacgcatgtcaagggattcctaccagtcattaaaa
cgtcatcttcaagatagacaaaaccatgctgtactgaccatcgttcaagaacatttgttt
gtagatgtatttgatggactacctcgttcaaagcaacagattgatgctacagcaggaggc
atggtgggagaagctaaaagagaagctaataaatccaaggtgttttatgggctgttaaag
gaaccggaaatcaacatacctttggatgatggcgatgaggaaatggatggagagggtaag
ccaaaaaaaaagaaacctaaaaaagatctatctgcaaaaagcaagaaacctgatccaaat
gcaccaccacagaacagaataccacttcttgaaatgaaagattcagataaactagagaag
cgaatagcgatgagggagctgtccaagcgtgtgagactctctcctgattgtttaccatcc
atttgtttttatacttgtcttcatgcacaccaaggattaacatcattagacattagtgat
gattccagtctgatggctgctggttttgcagactctgtgataaggctgtggacattgaca
cccaagaagttacgtggaatgaagtcttcattagacttgggttacctcgatattgaatct
gatgatattttggaaaggattatggatgacagaagtgcaagtgatttcagggtattacat
ggccatagtgggccagtgtatggaaccagctttagtcctgatagaagttttcttttatca
tcatcagaagatggaacagttcggttatggagtctcttcacttacagcaatctagtgtgt
tataaaggccataattatcctgtttgggacgtgcaatttggtccatatggtcattacttt
gccacagctggtatggataggacagcaaggttatggagtacagaacactttcaacctctc
agaatatttgctggccatttttcagatgtagatgttgttagattccatcccaactccaac
taccttgctacaggttccagtgataggacaatcaggctgtgggatattagcaatggtaaa
tgtgtccgaataatgaccggtcataagggttctatccattccttagccttttcacctaat
ggtcactacttggcatctacaggagaagacaagagagttttaatatgggaacttagacat
ggaagtttagttggggaacttactggacataatgatacagtatattcaatgtgcttctgt
agggatggccatctgttagcaacaggtggattagataattcggtcaaattatgggatatc
aagaaagtgtttgcagaagtagactcagatgatatggcaaccacaccacagattgtccag
tccgagaaatccaacatcttattaggttcttatcctaccagacacacccctgtgcatcat
cttcactttacaaggaggaatttacttatggctagtggaccttatttacctcctccatca
gcatcatctagccacactacaacatcatcagcaaccataacgacaacatcggcattagca
cattaa
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