Amphiura filiformis: 140155786
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Entry
140155786 CDS
T10871
Name
(RefSeq) general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
afil Amphiura filiformis
Pathway
afil03022
Basal transcription factors
afil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
140155786
09124 Replication and repair
03420 Nucleotide excision repair
140155786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afil03021
]
140155786
03400 DNA repair and recombination proteins [BR:
afil03400
]
140155786
Transcription machinery [BR:
afil03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
140155786
DNA repair and recombination proteins [BR:
afil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
140155786
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
BBL5_2nd
PH-GRAM_MTMR6-like
Motif
Other DBs
NCBI-GeneID:
140155786
NCBI-ProteinID:
XP_072034851
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All DBs
Position
6:62984974..63010146
Genome browser
AA seq
559 aa
AA seq
DB search
MAASSEEVLLVTNQVRHAKKDGTLYLMAERLAWQEENKDIFNVSHHYADIKQQKISPEGS
SKVQLQIVLHNGSSSKFHFANRDGPAVQKKERTDIKELMQQLLPRFRSMANKELEQKNRM
LQENPELFQLYKDLVISGVMSAEEFWASRKPVLESQPSVSSKTQTTGVSAAFLSDIKPQT
DGCNGVKYNLTADIIESIFRIYPAVKKKHAENVPNNMTEKEFWTRFFQSQYFHRDRINAG
SQDLFTECAKHDEKDLQEETMDFIKDPLLNVEGLSDQTLGEGYGCTLDKTNPSSSNAINS
SIIKRFNHHNTRVLSVSQSKSSSLLPNNVPSTTSTSNSNTNSNNHKTQPRDNENGEPKAK
RVRLKESISYADLAPSTSGTPVTLKLERTEGYYHGPTPISAFEYSSAEEVMGAMHRVHEE
TVATKTKAFQALSSSMAGAVMNELTPGGALMGASMHQPLHAVYSKEIQHDLKRLYTSLAE
LLRHFWSCFPVSSKAVEEKLMRMKGTLEQYQTKKLQPFKDSLAKQHIGPNLTIHIEELLE
TAYNKYSAWQAKKMGMSRR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggcagcttcttctgaggaagtcctgctggtgaccaatcaagtacgacatgccaagaaa
gatggcactctgtatctcatggctgaaagactggcttggcaggaagagaacaaagatatc
tttaatgtcagtcaccactatgctgatatcaaacaacaaaagatcagcccagaaggaagt
tccaaagtccagttgcagattgtccttcacaatggcagtagttccaagttccattttgcc
aatagagatggtccagctgtgcagaaaaaggaacgcaccgatatcaaagaactgatgcag
cagctcctgccaagatttagaagtatggcaaataaggaacttgagcaaaagaacagaatg
cttcaagaaaatcctgagctatttcagctgtataaggatcttgttatcagtggtgtcatg
tctgctgaagaattctgggccagtaggaaacctgtgctagagtctcagccaagtgtgagc
agtaagacccaaaccacaggtgtatcagcagcattcctatcagacatcaagccacaaacg
gatggatgtaatggagtcaagtataacctcactgctgatattatagagtctatatttaga
atatatcctgcagtgaaaaagaaacatgctgaaaatgtaccaaacaatatgaccgaaaag
gaattctggacaagattttttcagtcacaatatttccaccgggacagaatcaatgcaggg
agccaggatcttttcactgaatgtgctaaacatgatgaaaaagatttacaagaagagact
atggatttcattaaggatccattactgaatgtagaaggcttatctgatcaaacactagga
gagggctatggttgtacattagacaaaaccaatccgtcatcaagcaatgctatcaattca
tccatcattaagagatttaatcatcacaatacaagagtattaagtgtgtcacaaagcaaa
tctagctcactacttccaaataacgtaccgtccacaacctctactagcaactctaacact
aatagcaacaaccacaaaacacaacccagggacaatgagaatggtgaaccaaaggctaaa
cgtgtcagactcaaagagtcaatcagctatgctgaccttgcacccagtactagtggcaca
ccagtaactcttaaactggaaagaactgaaggctattatcatggccctactccaattagt
gcttttgagtatagtagtgcagaagaggttatgggtgcaatgcacagagtacatgaagaa
acagtagcaaccaaaacaaaagcatttcaggcgttatcatctagtatggctggtgctgtg
atgaatgagctgacaccaggaggagcattgatgggtgccagtatgcaccaacctcttcat
gctgtgtatagtaaagaaattcaacatgacctgaagagactctacacatcacttgcagag
ctgcttagacatttctggtcctgttttcctgtgtcaagtaaagccgtggaagagaaattg
atgagaatgaaaggaacattagagcagtatcagaccaagaagttacaaccatttaaagac
agtctagctaagcaacatattggtcctaatctaaccatccatatagaagaactcttggaa
acggcctacaataaatacagtgcctggcaagctaagaaaatgggcatgtcaagacggtga
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