Amphiura filiformis: 140155964
Help
Entry
140155964 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
afil Amphiura filiformis
Pathway
afil04140
Autophagy - animal
afil04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
140155964
04148 Efferocytosis
140155964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afil04131
]
140155964
Membrane trafficking [BR:
afil04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
140155964
Hops complex
140155964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_Vps41
zf-RING_5
DUF2175
zf-RING_11
zf-RING_16
WD40_CDC20-Fz
zf-C3H2C3
zf-RING_2
zf-C3HC4_2
zf-RING_UBOX
zf-ANAPC11
zf_RING_Vps8
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
140155964
NCBI-ProteinID:
XP_072035101
LinkDB
All DBs
Position
6:complement(71203365..71238783)
Genome browser
AA seq
980 aa
AA seq
DB search
MASIFEQYEQHTARSSSSIPQISREPGIGVPPISSGYVTASMEEDVHIFSKQRINFTPPK
PITHLVANNNILMMAMSDNTILRIDLEHPDQPDEVRVGEDRIHKLFLDPTGRHLLISTES
QEVLYLSRNGRKPKPLQKLKGHLISAMGWNKANASESTTGEILMGTTRGLIFETDIQAGD
DSRFFQQSLEQYWRQVFNLGKEGSVPVTGIEVERIPSTSPSERRFFVMATTPGRMYQFVG
TIPSSAEPPVFQTIFQRYEDSPASFLELPGDFGYSQVEFYYSKYRAPPANFAWMTGPGVY
YGGFDFTSKSKDNLTTESRLLPYPMSESEASQIPTPLSIVVTEFHVLLLFQDRMKVMCVL
NEQLVDEEIFQSRFGRLLGLTRDHIKKTIWCYTEQSVFRYKVTKESRDVWRMYLDKGDFD
KAKDYCQDNAANLDQVLTRQAQHFFDTQVFEKSAVYFAMTEKSFEEVALKFIEAKQTSAL
KMFLSKKLGGLKSQEKTQMTMLVMWLIELYLNQLGELRPQQDAKEAYNSLHEEFQKFLAQ
KSVKDCLSSNVNAVYDLIASHGGVEDMVYFAMLMKDYERVISHHIQHEGYENALDVLRKP
RNVELFYKFSPVLMQHIPQXLCQAWIELGRDLDPKRLIPALVQLDHSPEKNQVNEAIRYL
EFCVMQLSNTEKAIHNYLLSLYAKHQPEQLMGYLEQQGDIAENVHYDLKYALRLNAEHDH
KRACVHIYTTMGLFEEAVDLALQVDVELAKLSAEKPEEDEELKKKLWLRIAKHVVQKQSD
IQQAMGVLKECPALKIEDILPFFPDFVTIDHFKDAICSSLTEYNQHIETLKTEMEDATES
AKAIRSDIQEMRNKYGIVGGQQKCASCGYPLLTRSFYLFPCQHMFHSDCLISEVEPHLSQ
TKQKQMSELQHKLNNLTLQRQPSTSATDAISKRDEQEQMRNDLDDIIAAECVYCGEIMIK
SIDMPFITTEEYESVIQSWD
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggcctccatatttgagcagtatgaacagcacacagccaggtcatcatcaagcatccct
cagatctcaagggaaccaggcattggtgtaccacctatttcctcagggtatgttactgct
agcatggaagaagatgtacacattttcagtaaacaaagaatcaacttcacaccaccaaag
cctattacccatcttgtagccaataataatatcttgatgatggctatgtctgataacacc
atattacgtattgatttggagcacccagaccagccggacgaggttcgtgttggtgaggat
cgaattcacaaattattcctagacccgacaggaagacatctgcttattagtacagaatct
caggaggtcttgtatttatcacgcaacggaagaaaacctaaaccactccagaaattaaag
ggccacctgatatctgcaatgggttggaataaagccaatgctagtgaatcaacaacagga
gaaatactcatgggaactacaagaggccttatctttgagactgatatacaagctggtgat
gatagtagattcttccaacagagcttggagcagtattggagacaggttttcaatcttggt
aaggaaggatcagtaccagttaccggtatagaggtagagaggataccctcaacatcgcca
tcagagaggaggttctttgtcatggcaaccactcctggtaggatgtatcaatttgttggc
accattccaagctcagctgaaccaccagtattccaaacaatctttcaaagatatgaagat
agtcctgcaagttttttggaacttcctggtgattttggttacagtcaagtagaattctac
tattccaaatacagagcacctcctgcaaattttgcgtggatgacaggtcctggtgtatat
tatggtggttttgatttcaccagcaagtccaaggataatcttaccacagaaagcagactc
ctaccatatccaatgagtgaatcagaagcttcacaaattccaacaccattgtccattgta
gtcacagaattccatgtgttgctgctgtttcaagacagaatgaaggtgatgtgtgtctta
aatgagcaacttgtagatgaagaaattttccaatctagatttggtcgtctcctggggttg
accagagatcatatcaagaagacaatatggtgttacacagagcagtctgtctttagatac
aaggtcactaaagaatcaagggatgtatggagaatgtatctggataaaggagactttgac
aaagctaaagattactgtcaggataatgcagctaatctggatcaagtattaaccagacag
gctcaacacttctttgatacacaagtgtttgaaaaaagtgctgtgtactttgccatgacc
gagaaatcatttgaggaagtagcattgaaatttattgaagcaaagcagactagtgccctc
aaaatgttcctgtctaaaaaactaggtggactcaaatcgcaggagaaaactcagatgacc
atgcttgtgatgtggctgattgaactctatcttaatcaactcggtgaattgcgccctcaa
caggatgctaaagaagcatacaatagccttcatgaagaattccagaagttcttggctcaa
aagtcagtcaaggactgtttgagtagcaatgtaaatgctgtatatgatctcattgctagc
catggaggtgtagaagacatggtctactttgctatgctaatgaaagactatgagagagtc
attagccatcacatacaacatgagggctatgagaatgccctggacgtgctacgtaaacct
cgcaatgtagaattgttttacaaattctcaccggtactgatgcagcatatacctcagngg
ctgtgccaagcatggatagaattgggtcgtgatctagacccgaaaagactcattcctgca
ttggtgcaattagatcacagtccagagaaaaaccaggtcaatgaggccatccgatacctt
gaattttgtgtgatgcaactcagtaatacagagaaagctatccataattacctgttatct
ctgtatgccaaacaccaaccagaacaactcatgggatacctggagcaacaaggagatatt
gcagagaatgttcactatgacctgaaatatgccctgagattgaatgctgagcatgaccac
aagagggcgtgtgtacatatttacacaacaatgggtctgtttgaagaagcagtggatcta
gcattacaggttgatgttgaattggccaaactgagtgccgagaaaccagaagaggatgag
gaactgaagaagaaattatggctacgtattgccaagcatgttgtacagaaacagagtgat
atccaacaggccatgggggtcctcaaggagtgtcctgctctcaagattgaagatatctta
ccgttctttccagactttgtaaccattgaccattttaaggatgccatctgtagttcctta
acagaatataatcaacatattgaaacactcaagactgagatggaagatgcaacagaaagt
gctaaagctattagatcagatatccaagaaatgagaaacaagtatggtattgtaggaggt
caacagaaatgtgcatcatgtggctacccattgctgacaaggtcattctatctattccca
tgtcaacatatgttccattcagattgcctgatatcagaggtggaaccacacttaagtcaa
accaagcaaaaacagatgtctgaattgcaacacaagttaaacaaccttactttacaacgg
caaccatcaacaagtgccactgatgctatatccaagcgtgatgaacaggagcagatgaga
aatgacttagatgacatcatagcagctgaatgtgtgtactgtggggaaatcatgatcaaa
tcaatagacatgccgttcataacaacagaggaatatgagtcggtgatacagagctgggat
taa
DBGET
integrated database retrieval system
