KEGG   Amphiura filiformis: 140156487
Entry
140156487         CDS       T10871                                 
Name
(RefSeq) uncharacterized protein
  KO
K15542  polyadenylation factor subunit 2
Organism
afil  Amphiura filiformis
Pathway
afil03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:afil00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    140156487
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:afil03019]
    140156487
Messenger RNA biogenesis [BR:afil03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     140156487
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_WDR5 WD40 WD40_CDC20-Fz Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML WD40_Gbeta WDR55 Beta-prop_IFT140_1st EIF3I Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st ASA1 DSE1_N Beta-prop_Aladin Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd CFAP251_N Beta-prop_TEP1_C eIF2A WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_NOL10_N Beta-prop_WDR75_1st Beta-prop_Vps41 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st Beta-prop_WDR41 Beta-prop_DCAF12 Beta-prop_SPT8 WD40_like WD_LRWD1 PROPPIN WDCP
Other DBs
NCBI-GeneID: 140156487
NCBI-ProteinID: XP_072035531
LinkDB
Position
7:complement(28192271..28260449)
AA seq 1059 aa
MEGGSGGAPGGGAGGSGQGFFHRPRLPYYQKTQVYKHHHYLNRQSHGDGQPSNATNFDGK
RMRKSVSRKTVDYNGTVLRLLERRIWQRDQRDQRWMQPDMSYLHEMGPPSSMKHNPINAV
ATKFVRMSTNKVRCPIFCAVWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDYPVRT
MTWSHNDLWLLTADHLGYVKYWQSNMNNVKMYQAHKDNPIRGASFCPTDSKFATCSDDGT
VRIYDFLRCHEERIMRGHGADVRAVDWHPQKGLVVSGSKDNQQPIKLWDPRTGNSLATLH
AHKNTVMGLKWNQNGNWLLTASRDHLCKLFDIRTMKEMYVFRGHKKEATAISWHPIHEDL
FVSGGSDGSLLFWQIGNDKEVGAIESAHDSIVWSLAWHPLGHILCSGSNDHSIKFWARNR
PGDRMRDRYNLNTLPIGTAEEMLEYDDDASAGPVVPGLGLEFGLPEHLKKEDEEEMEGLD
TSIPGLDSSAEELARLKPQPQRKVPYAKPIPDEFQKAWDKLKAPGIAPQGAKGGPPHMNN
KAPHERPPNDQRHHPPGQPPQAGMPHMEQRGPPHGPPQGPSHGPPPHEQQRGPPGRPQGP
PHGPPPDAHHRPQQVPPQGQPPDPHHRPQQGGPHGHPPDPHRRPEEGPPHGQLPDPHHRQ
GPPHGQPPDTQHGQGPPPHGQGPPPHGQPPRHPGPGMQNPRMPGGPGMRGPRPVLLGQPS
GPRMPGNQPRPPHPRSEQEPPPPRNKGPPSLMSLNLDTPNREQSPADEDFRQGPPVDPAE
GQDVDLRKQFGGGGGGDVDLRNRFRDQDHRNPQFPPGHREDNGRFSEDEDFRHQRSRDSP
SGGPPARGPNGGFDPFMAGDTDLRQQQRGGPPGREQSPMDQDMRQGGPPGRIPPNREEFK
DLDDRFRGGDAAPRGDTDFRRFPPRDEGGFDQDQDMRFHGNNNRGPPQRGPPSDQGAPMD
VDLRKGPGGPLPPEGNRPPGPNQDLDERNRFNSRDERRPPPLLDPNEFQPQKRHWEEGPG
NDLERKVQVLTDHGWVMGEWETGVEVDEEDFQGGRQGHA
NT seq 3180 nt   +upstreamnt  +downstreamnt
atggaaggtggaagtggtggcgctcctggaggcggtgctggtggtagtgggcaaggattc
tttcatcgcccaagactgccttactaccagaaaacacaggtgtacaagcatcatcattac
ttgaacagacagtcccacggtgatggccaaccatccaacgcaaccaactttgatggcaag
cgtatgcgcaagtctgtcagcaggaagacggtggattataatggaaccgttctgcgcttg
ctagagaggcgtatttggcagagggaccagagagaccagaggtggatgcaaccggacatg
tcctacttgcatgagatgggaccaccctcgtctatgaaacacaatcccatcaatgcggtg
gctaccaaatttgtgagaatgtcgacgaataaggttcgatgcccaatcttctgtgcagtg
tggacacctgaaggcaggcgtcttgtgacaggagcttccagcggggaattcaccctgtgg
aatgggcttacattcaactttgaaactattttacaggcacatgactatcccgtacggacg
atgacatggagccacaacgacctctggctgctgacggccgaccacctgggctacgtcaag
tactggcagtccaacatgaacaacgtgaagatgtaccaagcacacaaggacaaccctatc
aggggagcaagtttctgtccgacggactccaagtttgcaacatgctccgacgacggaacg
gtgcgcatctacgacttcctgagatgccatgaagaaagaataatgagaggtcacggtgca
gacgtcagagcggttgactggcacccacagaaaggccttgtagtctcaggtagcaaagac
aaccagcaacccatcaagctatgggatccccgcaccggcaactcgttggcaacactgcat
gcgcacaagaacacagtgatgggcttgaaatggaatcagaatggcaactggttgttgacg
gcctctagggatcatctgtgtaaattatttgatatcaggacaatgaaggagatgtacgta
ttcaggggccataagaaagaggcaacagcaatctcctggcatcctatccatgaggatctg
ttcgtaagcggtgggtctgatggctcacttctcttctggcaaatcggcaatgacaaggag
gttggagccattgagtcagctcatgacagtattgtgtggagtctagcgtggcatccgctg
ggtcatatactatgctcaggctctaatgatcattccatcaaattttgggcacgaaataga
cctggtgacagaatgagagacagatacaacttgaacacactacctatcggtactgcagag
gaaatgttggaatatgatgatgatgcttcagctggaccagtagtgccaggtttgggatta
gaatttggtctccctgaacatctgaagaaagaagatgaagaagaaatggaaggacttgat
acatccatcccaggtttggattcctcggcagaagagcttgcacgtctcaagcctcaacca
cagcgtaaagtcccctacgccaaacccattccagatgaattccagaaagcatgggacaaa
ttaaaggcacctggtatcgcaccacagggagcaaaaggtggtccacctcatatgaacaat
aaggcaccacatgagagaccaccaaatgaccaacgccatcatccacctggccaacctcct
caagctggtatgccacacatggaacagagagggccacctcatgggcctcctcaaggacca
tcacatgggccaccaccacatgaacaacaaagagggccccctggtagaccacaaggccct
cctcatggaccgcctcctgatgcacatcacagaccgcaacaagtgcctccgcaaggacag
ccacctgacccacaccacaggccacaacaagggggtccgcatggacatccacctgatcca
catcgaagaccagaagaaggtcctcctcatgggcagctgcctgatccgcaccatagacaa
gggcctccacatggacagccacctgacacacaacatggtcaaggacctccacctcatggt
caaggacctccacctcatggtcagcctccaaggcatccagggccaggtatgcaaaatcca
agaatgccaggtggccctggtatgcggggtccccgacctgtgcttcttggccagccatct
ggaccacgtatgcctggaaaccaacccaggcctcctcatccacggtcagaacaagagcca
ccaccaccacgcaacaaaggtcccccatcattaatgtccctaaatctagacacaccaaat
agagaacaatcgccagctgatgaggatttcagacaaggtcctccagttgatcctgctgag
ggacaagatgttgatcttagaaaacaatttggaggtggcggtggtggtgatgtggatctc
aggaatagattccgagatcaagatcacagaaatccacagtttccaccaggacatagagag
gataatggcaggttttcagaggatgaagatttcagacaccaaagatcgagagacagtcca
tcaggtggcccccctgcacggggaccgaatggtggttttgatccttttatggccggcgat
acagatttacgccagcagcaacgtggaggaccacctgggagagagcaatctcccatggat
caggacatgagacaaggtggtccaccaggaagaataccgcccaatagagaagaattcaaa
gatttggacgacaggtttcgaggaggagatgcagctccacgtggagacacagactttcgg
agattcccaccaagagatgaaggtggttttgatcaagatcaggatatgcgtttccatggt
aataataatagaggtccaccacagaggggtcctccttctgaccaaggagcccccatggat
gttgatctaagaaaagggcctggaggacctctcccacctgaaggtaacagacctccagga
ccaaatcaagatcttgatgaaagaaatcgtttcaactcaagagatgaaagaaggccccca
ccattgttggatcccaatgaatttcaacctcagaaacgacattgggaagaaggtcctggc
aacgatttggagaggaaggtccaggtcctgacggaccatggatgggtgatgggggaatgg
gagacaggggtcgaggtggacgaggaggatttccagggagggaggcaggggcatgcctag

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