Amphiura filiformis: 140156859
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Entry
140156859 CDS
T10871
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
afil Amphiura filiformis
Pathway
afil03022
Basal transcription factors
afil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
140156859
09124 Replication and repair
03420 Nucleotide excision repair
140156859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afil03021
]
140156859
03400 DNA repair and recombination proteins [BR:
afil03400
]
140156859
Transcription machinery [BR:
afil03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
140156859
DNA repair and recombination proteins [BR:
afil03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
140156859
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
Zn_ribbon_GTF2H2
DUF8617
IBR
vWA_Rv0959
Motif
Other DBs
NCBI-GeneID:
140156859
NCBI-ProteinID:
XP_072035956
LinkDB
All DBs
Position
7:complement(19942688..19978806)
Genome browser
AA seq
401 aa
AA seq
DB search
MAAEEEPERTYTWEGDYERTWEAIREDEKGSLQATVDDIIQRVKRKRLLDKPTNVRLGMM
RHLFVVVDMSHCMEDQDLKPNRLACTVKLLEHFIEEYFDQNPISQIGIITTSNMRAEKLT
ELGGNPKRHIQALEKCNDKSCVKEPSLQNALEVAANTLRHMPGHASREVLIILGSLTTCD
PSNIHDTITAMKEHNIRCSVIGLAAEIRVCRKLCNTTNGTYGVILDESHFKDLLMEHTTP
PPATANTEPSPIRMGFPQHLLHTEKDKVDKPSMCMCHLDSKGSEGFSSGGYFCPQCNSKY
CELPIECKVCGLTLVSAPHLARSFHHLFPLGNFKEIQRNSIDNSDVIFCQACQIHLTDQS
VYQCPKCSNLFCLDCELFIHESLHSCPGCASTRPQPSNGTG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagaagaagaaccagaaagaacttacacctgggagggcgactatgaaaggaca
tgggaagcaatccgtgaagatgagaagggatcattacaagccaccgtagatgacatcata
cagagagtgaagagaaaacgtctcttagataaacctaccaatgtccgcctgggaatgatg
cggcatctgtttgttgtagttgatatgtcacattgcatggaggaccaagacttgaaacct
aacagattagcttgcacagtcaagcttttggaacattttatagaagaatattttgatcag
aatccaataagtcagataggaatcatcacaaccagtaatatgagagcagaaaaacttact
gagctgggaggcaacccaaaacgtcacattcaagccctagagaagtgcaatgacaaatca
tgtgtgaaagagccgtctctacagaatgcattggaagttgcagctaatacattaagacat
atgcctggtcatgctagtagggaagtactcatcattctgggtagtctaactacctgtgat
ccaagtaatattcatgatacaattacggctatgaaagaacacaatatccgttgttctgtg
attggtttagcagcagaaatcagagtgtgtaggaaactgtgtaatactactaatggtaca
tatggggtgattctagatgagagtcatttcaaggatctgttaatggaacacacaactcca
cctccagctacggccaacacagagccatcaccaataagaatgggatttccgcaacattta
ttgcacacagaaaaagataaagttgacaaaccatcaatgtgtatgtgccatttagattcc
aaaggatcagaaggatttagctccggtggttacttttgtccgcaatgtaacagcaaatac
tgtgagcttcctatagagtgtaaagtttgtggtttaaccttagtttcagctcctcatcta
gccagatcatttcatcatctctttcctctgggtaacttcaaagaaatacaaagaaactcg
atagataattccgatgtaatattctgccaagcctgccagattcatctcactgatcagtcg
gtatatcagtgtcccaaatgcagtaatctgttttgcttggactgtgaactcttcatccat
gaatcgcttcattcatgtcctggatgtgccagcactagaccacagccatccaatggcact
ggatag
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