Amphiura filiformis: 140157410
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Entry
140157410 CDS
T10871
Name
(RefSeq) exosome complex component 10-like
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
afil Amphiura filiformis
Pathway
afil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140157410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140157410
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
140157410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
PTB
Motif
Other DBs
NCBI-GeneID:
140157410
NCBI-ProteinID:
XP_072036695
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All DBs
Position
7:59546075..59589444
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AA seq
956 aa
AA seq
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MAENVDEPSTSKSSKMDGTADSELFPGFKDVTMYAQQALGQLMKATKTSHTLPSAGDDYD
FYSSYDSFRDFCEEQGNHALESINKLIRQQGVKGYLQPGGSSVSLDDKMDIIVETNDNLL
ERVGTLLDEASGITKPKESLFPAGSKPELMVASWNRKRKADTGETETKSFRMMHAKNVSR
PQMKFRDKVDNTNTPFVPVIKYKPNALKPLNVGTPGKADKKTPKALADFIQQQRRGEGSD
DTDSSQIQHPYQYELDHFVPNPEQLKPVESVSVQPVDDTPLTLVDSVEELEKLSKELKSL
TEFAVDLEHHSYRSFLGFTCLMQISTGTHDYIVDTLELRSELHILNDSFTDPSIVKVFHG
ANMDVEWLQRDLGLYVVNMFDTSPASQLLGLPRHSLAYLLQLYCSVEADKQYQLADWRIR
PLPSEMMKYAREDTHYLLYIYHKMKNMLLKQGNQQQNLLRTVLDRSRDVCLKRYIKPTFT
DESYMTLFRKNRKTFNKNQLDAFKLLYAWRDRVAREEDESTGYVLPNHMLFHICEELPRE
AHGVLACCTPIPPLLKQQVNEVHQLILKAKLYHIVQSTPTKEHRIPTPAKVKPGSFVTKA
VDPLESLTLCPHDISDAQDVNKDITQSRGLSNDLSGALMALATTSTMFGSASLPRIPDVK
MASPIIALFSISDKKTGDDMSEAQKKAASIKASLANPFERYLPSCKPSQIASSLLGADKI
SFSGNKNTSTTTPAIPSNPMEVVWKLKASTEPKKKTPTNTAVAPSPHRKWTSQHAASTVN
KLEMPAEDEDDETVPLRQQGLKKNPNRDSPLPEQPKPKRAKLATDASAPEATTPGSSSFQ
AYDYSKANMQLFEGALKQSHGKKKQFHATEESDSPHSKGSKSKNNPSSGVRSVVYGGRGT
EGRGRGGWRGGGGGRGGGGGRGGGRGGRGRGGRGGGGRGGFQGRGGGGRNQQWPKR
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaacgtggatgaaccttcgacgagtaaatcgtcaaaaatggatggcacagca
gattcagagctatttcctggattcaaagatgtgactatgtatgctcagcaagcattaggg
cagctgatgaaagcaaccaagacttctcacaccttaccctcagcaggagatgactacgat
ttctactctagctatgatagcttcagggacttctgtgaggaacaaggcaatcatgcatta
gaaagtatcaacaaattgatcaggcagcaaggggtcaaaggttaccttcaacctggaggg
tcgtcggtatccttggatgataaaatggacatcattgttgaaaccaatgataacttattg
gagagagttggcacactcttagatgaagcatccgggatcactaaaccaaaggagtctctc
tttcctgctggttccaaacctgaactaatggtagccagttggaataggaagagaaaagcc
gacacaggtgaaacggagaccaagtcgtttcgtatgatgcacgccaagaatgtgtcgcgt
ccgcagatgaaatttagagacaaagtggacaacaccaacacgccatttgtacctgtcatc
aaatacaaacctaatgccttgaagccactcaatgtgggtacacctggtaaggccgacaag
aagacgcctaaagcattagctgatttcatccagcaacaaaggagaggagaagggtctgat
gacacggattccagccaaattcaacacccgtaccagtatgaattggatcattttgtgcca
aacccggagcagctgaaaccagttgagtccgtttccgtgcaacctgtggatgataccccg
ttgacgttggtggatagtgtggaagaattagaaaagctgagcaaggagctgaaaagcctc
acagaatttgctgttgatttggagcaccactcttacaggtccttcctagggtttacatgc
cttatgcagatatccacagggacacacgactacattgtggacacgttagagctacgaagt
gagctgcatatcctaaatgattcgtttacagaccccagcattgttaaggtgtttcatggt
gccaatatggacgtagaatggcttcagcgtgacctggggctgtatgtggtgaatatgttt
gataccagtcccgcttctcaactcttaggcctaccgaggcattccttagcatatcttctt
cagctgtattgcagtgtggaggctgataaacaataccagttagcagattggagaataaga
cccttaccgtcagaaatgatgaaatatgcccgagaggacacccactacttactctacata
taccacaagatgaagaacatgttactgaagcaaggcaaccaacagcagaatttactcagg
acagtactagatcgtagtagggacgtttgccttaagagatacatcaaaccaacctttacc
gatgaatcctacatgacattgtttagaaagaatcgcaagacgttcaacaagaatcagctg
gacgcgttcaagttgttatacgcctggagagaccgggtggcaagggaagaagacgaaagc
accggctatgtgttgcctaaccatatgctcttccatatttgtgaagaactccccagagag
gctcatggtgtgctggcctgctgtacgcctatcccaccattattaaaacaacaagtcaac
gaagtccaccaacttattctgaaggcaaagctttatcatatagtacagtccaccccgaca
aaggaacataggatacctactccagccaaagtgaagccaggaagttttgtaaccaaagca
gttgatccactagagagcctgacactgtgtccacatgacatatcagatgcacaggatgtg
aataaagacataacacagtcaagaggactcagtaatgacttatcaggagcccttatggcc
ttggcaactacatccaccatgtttggcagtgccagcctcccaaggataccagacgtgaag
atggcgtctccaatcatcgcattgttttcaatcagtgataagaagactggagatgacatg
agtgaagcccagaagaaagctgcatctatcaaagcatctttagctaatccatttgaacgg
tacctgccaagttgtaagccaagtcagatagcttcatccttgctgggggctgacaagatc
agtttcagtggtaataagaatactagcacaacaactccggcaattccgtcaaatccaatg
gaggtggtgtggaaattgaaggcctcaactgaacccaagaagaagacacctacaaatact
gctgtagccccatccccgcataggaaatggaccagtcaacatgctgcgagtacagtcaat
aaattggaaatgccagcggaagatgaagatgatgagactgtaccacttagacaacagggt
ctgaagaaaaacccaaatcgtgattcaccgttaccagaacaaccaaaaccaaagagagcg
aagcttgctacggatgcctctgcaccagaagccacaacaccaggcagctcttcattccag
gcatacgattacagcaaggccaatatgcaattgtttgaaggagcattgaagcagagccat
ggcaagaagaaacagtttcatgctactgaagaatctgatagtccacattccaagggatct
aaatccaagaataacccttcctcaggagtccgtagtgtagtatatggtgggagaggaaca
gagggaaggggcagaggaggatggagaggaggtggaggaggcagaggaggtggaggaggc
aggggaggtggtagaggaggcagaggaaggggaggcagaggaggaggaggcagaggagga
tttcaaggacgaggaggaggaggaagaaatcaacagtggccaaagagatga
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