Amphiura filiformis: 140158509
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Entry
140158509 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
afil Amphiura filiformis
Pathway
afil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
140158509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afil03021
]
140158509
Enzymes [BR:
afil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
140158509
Transcription machinery [BR:
afil03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
140158509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
CbiG-like_linker
Motif
Other DBs
NCBI-GeneID:
140158509
NCBI-ProteinID:
XP_072037718
LinkDB
All DBs
Position
8:3244640..3313314
Genome browser
AA seq
1389 aa
AA seq
DB search
MVKEQFRETDVAKKISHVCFGLMAPDEIRRLAHLHVVSKNLYQQDTRTPVPYGVLDHKMG
TSEKDNQCLTCEKPLSDCVGHYGYIDLELPVFHIGYFRSVINILQSICKTCARITLNADD
RKMFLDTLRKPGLTYLQKRALRKKIHDKARKSNICPHCSVRNGPVKKCGTLKIVHERFKS
TRAMDESIITEFQASFETAKQHNKDIEPLLSKAQVESLNPLIVLNLFKRVPSEDIPLLIM
ESERSRPQDLLLTRLLVPPLCIRPSVISDLKSGTNEDDLTVKLTEIIFLNNVIQKHRQAG
AKMSMIMEDWDFLQLQCALYINSETSGIPLNMQPKKPTRGFCQRLKGKQGRFRGNLSGKR
VDFSSRTVISPDPNLRIDEVAVPVHVAKILTYPEKVTKANIALMRKIVINGCDVHPGANF
VEQRHTNHKKYLRYGNRQKMAQELKYGDIVERHLMDGDVVLFNRQPSLHKLSIMAHYARV
MPFRTFRFNECVCNPYNADFDGDEMNLHLPQTEEAKAEALCLMGVKSNMVTPRNGEPLIA
AIQDFITGGYLLTQKEIFFDRAKTCQIIASMLSGRDKYLRIDLPPPAIIKPMNMWTGKQI
FGLILNPNQSCGIIANLRAKGKGYTKDEDLCVNDSYIVVHNSQLLCGAMDKSTLGAGSKS
NIFYILMRDYGEEVAADAMSRLAKICPFFLSNHGFSIGIGDVTPGQGLIRSKMKLLDAGY
SKCDEYIRDLENGKLQTQPGCTAEETLEAIILKELSVIRDHAGKACLQELPKSNSPLTMA
VCGSKGSFINISQMIACVGQQAISGKRIPNGFEERALPHFKRQSKIPAAKGFVRNSFYSG
LTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSHYDNTVRNSMGDIVQFV
YGSDGLDPAAMEGKDKPVDLNRVLNHIKCKYSCRSEFAMGSQAIKEQSAEIIDGPQFKDC
SQAFKQEVKTFMDDLAYLTRTCRDAYGVPEVQSEKGVKYQVERITPTQLREFLLMCNSKH
MLSRIEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNIST
PIISALLEVDDDADVGRVVKGRIEKTRLGEVSEYLEEVFLPDDCFILIKLDLDRIKLLKL
EVSSSSVANSICASKLRVKHQHVRVHSSQVLTVHPQETSKSSMYYTLQFLKEHLPEVVIK
GIPSVSRAVITLDDKAGQKKYKLLVEGDNLQAVIATRGVKGTATTSNNTSEMEKTLGIEA
ARQTIIEQIEYTMVSHGMSIDHRHVMLLADLMTYKGEVLGITRFGLAKMKESVLMLASFE
KTADHLFDASYHGQKDAVCGVSECIIMGIPMHIGTGIFKLLHKAEKDCTPPTRKLIFDNP
EFHLPGMAT
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atggttaaggaacagtttcgagagacggatgttgccaagaaaataagccatgtttgcttt
gggcttatggcacctgatgagatccgtcgtcttgctcacctacatgtggttagcaagaac
ctgtatcagcaggatacaagaacacctgtgccttatggtgtactggaccataaaatgggt
acaagtgagaaagacaaccaatgtttgacatgtgagaagccattatctgattgtgttggt
cactatggttacattgacttagagctaccagtctttcatattggctacttcagatctgtc
atcaatatcttacagagtatttgcaagacatgtgctagaatcacactgaacgcagacgat
aggaaaatgtttctagatactttacgcaagcccggactaacataccttcagaaacgagcg
ttaagaaagaagattcatgacaaagccagaaaatcaaatatatgtccacactgcagtgta
cgcaatggtcctgttaagaagtgtggtaccctcaagattgttcatgaaagattcaaatca
actcgtgctatggatgaaagtatcatcactgagttccaggcatcgtttgagacagccaaa
caacataacaaggacattgaacctctcctgagtaaagcacaagtagaaagtctgaatcca
cttattgtgttgaatttattcaaaagagttccaagtgaggatataccattattaataatg
gagagtgagagaagtcggcctcaggatctactactcactagactgttggtgcctcctctg
tgcattagaccttctgtcatatcagacttaaagtcgggaacgaatgaagatgacttgacg
gtgaagttgacagaaatcatcttcctaaacaatgtcatccagaaacacagacaagctggt
gctaagatgtccatgataatggaagattgggatttcttacagctgcagtgtgcattatat
attaacagtgagacatctggtataccactgaatatgcagccaaaaaagcccacaagaggg
ttctgtcagcggttgaagggtaaacagggtcgtttccgtggcaatctatctggcaagaga
gttgatttttccagcagaactgtgatttctcctgatcctaatttgcgcattgatgaggtt
gctgtgcctgtacatgtggccaagattttaacctatccagaaaaggtcaccaaagctaac
atagcccttatgagaaagattgtcatcaatggatgtgatgttcacccaggtgcaaacttt
gtagaacagaggcataccaaccataaaaagtacttaagatatggcaacaggcaaaagatg
gcacaggagctcaagtatggtgacatagttgagaggcatctgatggatggtgatgtagtg
ttattcaacagacagccttccctacataaacttagtatcatggctcactatgctcgtgtt
atgccattcaggacattccgtttcaatgaatgtgtgtgtaacccatacaatgctgatttt
gatggtgatgagatgaatctgcatttaccacagacggaagaagcaaaggcagaagccttg
tgtctcatgggggtcaaatccaacatggttacccctagaaatggtgagccactcattgct
gctatacaggacttcattacaggtggctacttactgactcaaaaggagatattctttgat
agagctaagacatgtcaaatcatagccagtatgctctctggaagagacaaatacctacgt
attgacctcccacctcctgctataattaagccaatgaacatgtggacaggaaagcagata
tttggactgatattgaatcctaaccagagttgtgggatcatagcaaatctgagagccaaa
gggaagggttataccaaagatgaagatctctgtgttaatgactcatacatagttgtccat
aacagtcagctcctgtgtggtgcaatggataagagtaccttgggcgccggttcaaagagt
aacatcttctacatcctgatgagggactatggggaggaggtagctgctgatgctatgagt
cgtctggcaaagatatgcccattctttcttagtaaccatggtttctccattggaattggt
gatgtgacaccaggtcagggattgattaggtccaagatgaaactcttagatgctgggtat
tccaagtgtgatgaatatatcagggatttagagaatggcaaattacagactcagcctggg
tgtacagcagaggaaacattagaagccattatactgaaggagttgtcagtgatccgtgat
catgctggtaaagcatgcctacaagaactaccaaagagtaacagtcccttgactatggct
gtgtgtggatcaaaaggttcattcatcaacatatctcagatgatagcatgtgtaggacag
caggctattagcggcaaacgaatcccaaatgggtttgaagaaagagcactacctcacttc
aaaaggcaatccaaaatccccgcagctaaaggctttgtgaggaatagtttctattcaggc
ctgactccaactgaattcttcttccataccatggcaggaagagaaggattggttgacact
gctgtgaagactgcagagactggctacatgcagagaagattagtcaaatcattggaagac
ctgtgttcacactatgacaacacagtacgtaattctatgggtgatattgtgcagtttgtg
tatggttctgatggcctagacccagcagctatggaaggcaaagataaacctgtagatctg
aatagagttcttaatcatatcaagtgcaagtactcatgtagatcagagtttgccatggga
agtcaagccataaaggagcaatcagctgagatcattgatggaccacagttcaaagattgt
agtcaagcatttaaacaagaagtcaagacattcatggatgatctggcctacctgactcga
acttgtcgtgatgcatatggtgtacccgaggtgcaatccgagaaaggtgttaagtaccaa
gttgagagaattaccccaacacagctgcgtgagtttctgttgatgtgtaacagtaagcat
atgttatcccgcattgagccagggacagcagtgggtgctataggagctcagagcattgga
gaaccaggaacacagatgacactcaaaactttccattttgctggtgtagcttccatgaat
atcacccttggtgtgcctagaatcaaagaaatcatcaatgcatctaagaacatcagtact
ccaatcatatctgctctgttagaggttgatgatgatgcagatgtagggcgagtagtcaag
gggcgcattgagaagacacgcctgggagaggtgtctgaatatttggaggaagtgtttcta
ccagatgattgtttcattttgattaagctggatctggataggatcaaacttctcaagttg
gaagtgagttcctctagtgttgccaactcaatctgtgcctcaaagctgagagtcaaacac
cagcatgtgagagtgcattcatcacaagtgttaacagtgcaccctcaagagaccagtaag
agctctatgtactacacattacagtttctcaaggaacatttacctgaagtggtgattaag
ggtataccatcagtatcacgggctgttattaccctagatgacaaagctggccaaaagaag
tacaaattgttggtagagggggataacctacaggctgtcatagcaacaagaggtgtgaaa
ggaacagccacaacatccaacaacacctctgagatggagaagacattaggtattgaagcg
gctagacaaaccattatagagcagatagagtacactatggtgagccatggaatgagtata
gatcatcgtcatgtcatgttgctagctgatcttatgacatacaagggtgaagtacttgga
atcactcgctttggtttggccaagatgaaggaaagtgtgcttatgttggcgtcgtttgag
aagactgcagatcatttatttgacgcttcatatcatggccaaaaggatgctgtatgtggt
gtgagtgagtgcatcattatgggtattcctatgcacattggaaccggtatattcaagtta
ctccacaaagctgagaaggattgcacaccaccaacacgtaaactcatctttgataatcca
gaatttcatttacctgggatggccacatga
DBGET
integrated database retrieval system
