Amphiura filiformis: 140159249
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Entry
140159249 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
afil Amphiura filiformis
Pathway
afil03013
Nucleocytoplasmic transport
afil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140159249
03015 mRNA surveillance pathway
140159249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140159249
Enzymes [BR:
afil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
140159249
5.6.2.5 RNA 5'-3' helicase
140159249
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
140159249
mRNA cycle factors
Common to processing body (P body) and stress granule
140159249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
AAA_16
NPHP3_N
DEAD
UvrD-helicase
NAT10_TcmA_helicase
nSTAND3
ATPase
AAA_22
SRP54
PhoH
Motif
Other DBs
NCBI-GeneID:
140159249
NCBI-ProteinID:
XP_072038758
LinkDB
All DBs
Position
8:complement(55840390..55902756)
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AA seq
1138 aa
AA seq
DB search
MSVDAYGPSSQSLTFLDTEDGELLGADTQGTEFEFNVGDFTLPSQTQTQSQASQLEVASQ
SQSQAEPGDKPVENGFAEEAEAAEEGVEAATEGVKELTFEEDEEESFLLKDLPQHACKYC
GIHDPSAVVLCNSTKKWFCNGRGNTSGSHIINHLVRAKCKEVTLHKDSPLGETILECYNC
GCRNVFLLGFIPAKADSVVVLLCRQPCATQSNLKDMNWDPSQWQPLIQDRCFLKWLVKIP
SEQEQLRARQISAQQINRLEELWKETPEATLEDLEKPGVDEEPASVMLRYEDAYMYQNIF
GPLVKMEADYDRKLKETQTQDNISLRWDIGLNRKTRAYFVFPKKEDLKLMHGDELRVRYL
GDLREPWSGVGHVVKIPDNYGDEICIEMKSGVGIPVNCTQNFVVDFVWKSTSFDRMQSAL
KTLAVDETAVSSYLYHKLLGHEVENMVLKCNLPKRFSAPHLPELNHSQVSAVRTVLTRPL
SLIQGPPGTGKTVTSATIVYHLAKQSLGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAK
SREAIDSPVGFLALHNQIRNMEGSEEMKKLQALKEEIGELSSADEKRFRALKRNCERELM
QNADVICCTCVGAGDPRISKFRYRAVLIDESTQATEAECLIPAVLGCKQLVLVGDHCQLG
PVVMCKKAANAGLSQSLFERLVVLGIRPIRLQVQYRMHPSLSQFPSNIFYEGSLQNGVTS
AERTNRAVDFPXPQADKPMFFYTTTGQEEIASSGTSYLNRTEASNVEKLTTRFLRAGVKP
EQIGIITPYEGQRAFVVQYMQYSGPLNTKLYQDVEIASVDAFQGREKDYIILSCVRANDH
QGIGFLNDPRRLNVALTRGRYGVIIVGNPKVLSRHPLWNHLLTHYKEQKVLVEGPLNNLK
ESMIQFSKPRKLVNPSNPGGRFMTTAMFDARELLIPGGPYDRSGMMNGGAGTSRFHHPAR
VHDQMGYIQPQQAHMAASGVPIPVNMFMPPPPHHGPPFFNQGPPPYGGHHHPGPRGYKGP
PPNRDRRRGKGQHVSHQHANNSQNTSQYNLSLQSQDGSQPFSQGPLTQGNMSMSQPMSQP
GLSQPGFSQPGLSQPGLSQPELSQDSYLGEEFKSQVDNALSQDSTYQGDRNYQHTFGY
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagatgcctatggtccaagctcgcagagcttgactttcctcgatacagaggac
ggagaattattgggtgcggacactcagggcacagagttcgaattcaatgttggggatttc
acccttccatcacaaactcagactcaaagtcaggcttcgcagcttgaagtagcatctcaa
agtcaaagtcaggctgagcctggtgacaaaccagtggagaatggttttgcagaagaggcc
gaggcagcagaggaaggagtggaagcagctacagaaggtgtgaaggaactgacatttgaa
gaggatgaagaggagtcatttcttctcaaagatctccctcagcatgcatgcaagtattgt
ggaattcatgatccatcggcagtggtgttgtgtaactcaactaagaagtggttctgcaat
ggaagagggaacacatcaggaagccacatcataaaccacttggttcgagccaagtgcaag
gaggtcactcttcacaaagacagccccctcggtgaaaccatcctggaatgctacaactgc
gggtgtcgtaatgtgttcctactggggttcatacctgccaaggcagactctgtggtggtg
ctactgtgtcgtcaaccatgcgccacgcagagcaatctcaaggacatgaactgggatcca
agccagtggcagcccctcatccaagatcgctgctttctgaaatggttggtgaagattcca
tcggagcaggagcagttgagagccagacagatatcggctcagcagatcaacaggctggag
gaactctggaaggaaacccctgaggcaacactggaagatctggagaaaccaggagtggat
gaagaaccggcatctgttatgctgaggtatgaagatgcttacatgtaccagaacatcttt
ggtcctttggtgaaaatggaagcagattatgacaggaagttgaaggagacacagacgcag
gacaacatctctctgcgatgggacattggtcttaacaggaagaccagagcctattttgtg
ttccccaagaaagaagatctgaagcttatgcatggtgatgaactgagggttcgctacctt
ggagacctgagagagccgtggtcaggagtcggccatgttgtcaagatcccagacaactac
ggtgatgaaatttgtattgagatgaagagtggcgtcggcatccccgtcaactgcacacag
aactttgtcgtagattttgtctggaaatctacatcttttgacaggatgcagagtgcactg
aagacgttggcagttgatgagacggcagtgtctagttatctataccataagcttcttggt
catgaggtggagaatatggtgctcaagtgtaacctgcccaagaggttctctgctccgcac
ctgccggaactgaaccactcgcaagtgtctgctgtgcgcacagtgttaactagacctctc
agtcttattcagggcccacctggtactggcaagacggtgacatcggcaacaattgtgtac
catctagcaaagcagagcttgggacaagtcctagtgtgtgcaccaagtaacatcgctgtg
gaccagctcacagagaaaatccacaagactggtctcaaagtggtgcgtctctgtgccaag
agcagagaagccattgattcaccagtaggtttcctggctctccataaccagatacgtaac
atggaaggcagcgaggagatgaagaaactgcaagctctgaaggaagagattggagaactg
tccagtgctgatgagaagagattcagagctctgaagcgcaactgtgagagagaactcatg
cagaatgccgatgtgatctgctgcacctgtgtaggtgctggggatccacggattagcaag
ttccgttatcgagccgtactgattgatgagagcacccaggcaaccgaggcagagtgcctg
attcctgcggtgttgggatgcaaacagcttgtcttggttggcgaccactgccagcttggt
ccagttgtgatgtgcaaaaaggcagccaatgcgggcctgtctcagtctctatttgagcgc
ctcgttgtactgggcattcgaccaatcagattgcaggttcagtatcgtatgcatccttcc
ctcagtcagttcccgtcgaacatcttctacgagggctctctgcaaaatggcgtcacgtca
gctgagagaaccaaccgagctgtggatttccctnggcctcaagcagacaaacctatgttc
ttctacaccacgacaggacaagaagagatagccagctccggtacatcctatttgaataga
actgaggcatccaatgtggagaagctcacgactcgcttcctccgtgctggcgtcaaacca
gagcagatcggaatcatcactccttacgaaggtcagagggcatttgtagtgcagtacatg
cagtacagtggacccctcaataccaagctctatcaggacgtagagattgccagtgtggat
gccttccagggacgtgagaaagactacatcatcttgtcctgtgtgagggccaatgatcat
caaggaattggtttcctcaacgatcctagacgtctcaatgtggcccttactaggggcaga
tatggcgtgataatcgtcggcaaccccaaagttctctctcgtcatccgttgtggaaccac
ctgctgacccattacaaggaacagaaagtcctggtggaaggtccactgaacaacctgaag
gaaagcatgatccagttcagcaagccacgcaagctggtcaacccatccaacccgggtgga
cgtttcatgactacagctatgtttgatgcaagagagctgttgattccaggaggaccatat
gacaggtctggcatgatgaatggaggagctggcaccagtagattccatcacccagctcgt
gttcatgaccagatgggttacatccagccacagcaagcccacatggcagcctctggtgtc
cctatcccggttaacatgttcatgccccctcctccacaccacgggccgcccttcttcaac
caagggccccctccatatggtggacatcaccatcctggtccaagaggttacaagggaccg
cctcctaaccgtgatcgccgtagaggcaagggacagcatgtttctcaccagcatgctaat
aacagtcagaacacctcgcagtataatctgtctctgcagagtcaggatggttcacagcct
ttctcacaaggcccgctgacccaaggcaacatgtccatgagtcaaccaatgagtcaacca
ggcctgtctcagcctggcttctcccagccggggttatcgcagccgggactgtcgcaacca
gaactgtcacaggacagttatcttggggaggagttcaagtcccaggttgacaacgccttg
tcccaggactccacctaccaaggcgatcgcaactaccagcacaccttcggctactag
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