Amphiura filiformis: 140160541
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Entry
140160541 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup98-Nup96-like
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
afil Amphiura filiformis
Pathway
afil03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140160541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140160541
03036 Chromosome and associated proteins [BR:
afil03036
]
140160541
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
140160541
Chromosome and associated proteins [BR:
afil03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
140160541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
SIP1
Motif
Other DBs
NCBI-GeneID:
140160541
NCBI-ProteinID:
XP_072039882
LinkDB
All DBs
Position
9:5000218..5055597
Genome browser
AA seq
1926 aa
AA seq
DB search
MFGSTNKPFGSTFGAGSAFGSKTPASTGFGTPGAFGAQTPGSSLFGGTNTSSTGGLFGGG
TSTFGQTATSSTGFGFGGTNTTSAAGGGLFGGTNTGGSLFSTPAATSNAFGSAAFGGSAS
GSIFGQTSTASTAFGQPATSSAGGLFGGTAAGGSLFGGQQAVVGTTVKFQPASGSDTMVK
NNVSTTVNTRHMVITAMKEYEGKSFEELRTEDYLANRKGPTSGSLLGGSNLTTTDNKPGG
MFGQQTSQASTFVFGQQNKPVFGGTSTGKIGGFGATPTSGGLFGGQTQQPAGSLFGSKPT
GFGTSTSTGGSTLFGNTGTTGFGANNNQKSLFGQPTTQSSLFGQTSTGGFGTTTGFGTTT
GFGQTQQGGGLFGNKPTGFGTPTQTGGGLGGAAGGGLFGGQKPGLTLGGTTGTGFGGFGT
STGTGGLFGAKPATGFGTGLGTGLGTGLGXGLGTGTTGGGLFGTTNQPSTLGGFGGGFGT
GLGGTSSGLGLAGTNTGLGSAGVGGGAGGNQQLQQQMLVLLNSPYGDNPLFRNNITNSDK
TDETLKPISAAAQKALSTPPHYKVSARPSPKLRPRPIQSVGNKSKLFDGFEEEDATLNSA
IFVKRRSVKKLVIKKKSDKDSLEDSQHPLSATRAFSQEEELISPLPAYPKDSLAQTHMQR
LSEEQRSSSPAKTSPTSPGNGPAQKLFSTIAKPDSSPSSHNKPEDPDCTIAALNVKNAHI
SRGSTELDSTSDLDRSSSQEDNQENIPPPHPAGVALRRTGYYIIPSLEELADATDENGDC
KVEDLTIGREGYGSVFFPGETDLTGMNLDEIVHIRRKEITVYPDDDNKPDIGDGLNKKAE
VTLDRTWPLDKTNRQPIDDPDRLRAMDYAGKLERATAKLGATFLEYRAETGSWVFRVQHF
SKYGLTDKDEEEDEAAPGGQQPPARQPLPKDQSKPEQKKEQPPRQDKPAPPPTQSLQQDR
HVPSLQRRESAGGDEEPMGDDAEMGEMPRTGLGGVAYGAYMNGDAADDEMRMIEDNRLME
ESLRRHEMEKAGMDGEEEHMPSSQHLATALGMSAHRMQVMKASFFAMDPEPEEYEQYGSS
ATSTMPPPRPSMFDIPARPSPIPKMEESMSERGLPHSAWKPRPLGSPAKFLAGMSPVTSS
RASPVPKMFKEEHVERREGVTSGVFASKPKASPIGLPPALLIPSGISQRDHAPKVVGSRP
MPHIVPLPHSVVGGKQNYLADAALVMGRSFRVGWGPNWTMVHSGKAVGTSVKVPEIKQEP
STFSMLTSRAPTKSVLDAKPFSVSMEKVNIAPHLVGKDNKVLDLHEHALQVQLYHSICST
EKPCPAYAAKSGIQALHDQSQIATRDRTAGLSRDREALEHAANVWDLMVALWGRLPEEED
DGEDLDREGYPYRKARREAFSRWLAATAHNRVQVEVSNSKFKDLGHAEAVFSLMSGQQIS
EAARAAQKSGDHRLALLLAQAGCSHEVRQLVTKQLSDWFEIKADQFVAPQYLRIYALLAG
QLVWSSSIGTINTCQTLDWKRALAVHLWHLCTPVASISDALQEYENGFKGHTSVGNYCKP
PRPPYMENNPGLYGDLDDTADEESMMMSEEGDGVGDREFVVRDMCYHLLKLYSNRGHRLE
RVLAPTTHSGYQLDYRLSWHVLQVLQAVGYSHISEYYLTRLHISYASQLEALGLWHWAIF
VLLHIPNNERREHAVREVLSRQCSLLRSEENAAKEQFLIHRLNMPVAWIHEAKALRALYE
VRHHDRAWHLLKAGHWNDSHSVIIQHLAADAVINENYEYLKGMLSELAPDDRSITIQDWD
TNGQVYLDFINMEQKVQSLVQGSTTIYELEKLHPDIASLCNRVGNLQCITAKDRLCQSQI
SKRTGNMMKIVLKLQQQGLSPGDSLPDISIPSRLLAPHIGKLPMPEDYSLQELRQLTRSY
TVELTA
NT seq
5781 nt
NT seq
+upstream
nt +downstream
nt
atgtttggatcaaccaacaaaccttttggttccacttttggagcaggatcagcatttgga
agtaaaaccccagcgtccactggttttggcacccctggtgcatttggagcccagaccccc
ggatcatcattatttggaggaactaataccagttctacagggggactatttggaggaggc
accagtacatttggtcagacagctacatcatcaacaggatttggttttggaggaacaaat
accacaagcgcagcaggaggaggactctttggtggcaccaacactgggggcagtctcttc
tcaacaccagcagcaactagtaatgcatttggatcagcagcatttgggggcagtgcttcg
ggtagtatttttggtcaaaccagtactgcaagcaccgcattcggccagccagctaccagc
tctgctggcggactctttgggggcacagctgctggagggtcattattcggtggccagcag
gcggtggtaggaactaccgtcaaattccaaccagcatcaggatcagatacaatggtgaaa
aataatgtgtctacaacagtcaatacaagacacatggtcatcaccgctatgaaggaatat
gaaggcaaaagtttcgaggaattacgaacggaggactacctcgccaatcgtaaaggtccc
acttcaggcagcctccttggcggatccaacctgacaacgactgacaacaaaccaggggga
atgtttggtcagcagacatcacaagcatcaacctttgtgtttggccagcaaaacaaacct
gtttttggtggaacaagcactggtaagattggtggatttggagctacaccaacctctggt
ggtttatttgggggccaaacccagcagccagcaggtagtttgtttggaagtaaacctact
ggttttggcaccagcactagcactggaggctcaacattgtttggcaacacaggcaccaca
ggctttggagcaaataacaatcaaaagagtttgtttggacagcctacaactcaatctagt
ttgtttggccagacttccacaggaggctttgggactacaacaggatttggcaccactact
ggatttggacaaacccagcagggaggtggcctctttggcaataaacctacaggttttgga
acccccacccagactggaggtgggcttggaggagctgctggtggtggattattcggagga
cagaaaccgggcctgactcttggaggtaccacaggcaccggattcggtggatttggcacc
agtactggcacaggtggactctttggtgctaaaccagccacagggtttggcaccggtctt
ggcactggtcttggcactggactgggtnacggattaggaacaggcaccactggaggaggc
ttgtttggaacaacaaaccaacctagtacgttaggtggattcggaggaggctttggaacc
ggtcttggcggtacaagtagcggtctgggtcttgctggaacaaacactggcctaggcagt
gctggtgtaggaggaggtgcaggaggtaatcagcagctacagcagcagatgctggtgctg
ttaaactcaccctatggagacaatcctctctttaggaataacatcacaaattctgacaag
acagatgaaacgttaaaacccatcagtgctgcagcacaaaaagcactaagcacgccacca
cattataaggtatcagccagaccgtcacccaaattgcgccccagacctatccagtctgta
ggcaacaagtccaaattatttgatggatttgaagaagaggatgccacactcaactctgct
atatttgtgaagagaagaagtgtcaagaagctggtaatcaagaagaaatcggacaaggat
tctcttgaagacagtcagcatccattaagcgcaacccgtgcctttagccaagaggaagag
ttaatatcaccattgccagcttaccccaaagattcacttgcacagactcatatgcaaaga
cttagtgaagaacaaagatcatcatctcctgccaagaccagtcctacatcccctggaaat
ggcccagcacagaagttattctccaccattgctaaacctgacagctctcctagcagtcac
aacaagccagaagatccagactgcaccatcgcagcactcaatgtgaaaaacgcacacata
tcaagaggttcaactgagctggactccacctctgatcttgatcgttcttctagccaagag
gataaccaagaaaacattccacctccgcatccagccggagtcgctttgagacggactggg
tattacataatcccatccttggaggagcttgccgatgcaactgatgaaaatggggattgt
aaagtggaagatttgaccataggaagagaagggtatggaagcgtattcttcccaggagaa
acagatctgacaggaatgaatctagatgaaatagttcacattcgtagaaaggagatcacc
gtgtacccagacgatgacaacaaaccagacattggtgatggactcaacaagaaggcagag
gtcacactggacaggacgtggccactggacaagacaaatagacaacccattgatgaccca
gacaggttgagggcaatggactatgctgggaagctggaaagagctacggctaaactggga
gcaacattccttgaatacagggctgagactggttcatgggtgtttagggtacagcatttc
agcaagtatgggttaaccgacaaggacgaagaagaagatgaagcagcccctggagggcag
cagccaccagccagacaaccgcttcctaaagatcagtccaaaccagagcaaaagaaagag
cagcctccaagacaagacaaaccagctccaccaccgacacagtctcttcaacaagacaga
catgtcccctctctgcagagaagagagagtgctggaggggatgaggagcctatgggagat
gatgcagagatgggcgagatgccaaggactggtcttggtggtgtggcgtatggagcgtat
atgaatggagatgcagctgatgatgagatgagaatgattgaagacaaccgcttgatggag
gagagtcttagacgtcatgagatggagaaggctggtatggatggtgaagaggaacatatg
ccatcatcacaacaccttgccactgctcttggaatgagtgcacacaggatgcaagtgatg
aaagcctcattttttgcaatggatccagagccagaagaatatgagcaatacggcagttct
gccacatcaacgatgccaccgccaaggccttccatgtttgatatcccagctagaccatca
ccaataccaaaaatggaagagtccatgtctgagagaggtttacctcatagtgcatggaaa
cctcgccctctaggtagcccggccaaattcctagcaggcatgtcgcctgtgacaagctca
cgtgccagcccagtaccaaaaatgtttaaagaagaacatgtggagagaagagaaggagtg
acttccggagtatttgcatccaaacccaaggcctccccaatcggtcttcctccagccctg
ctgattcccagtggtatcagccaacgtgatcatgcaccaaaggtcgtagggtcacgacct
atgcctcacattgtgcccttaccacattctgttgttggtggtaagcagaattacttggcc
gatgcagcgttggttatgggaaggtcattccgtgttggatggggaccaaactggacaatg
gtgcattctggaaaagctgtggggacatctgtaaaagtaccagagatcaagcaagaacct
agtacatttagtatgctgacatcaagagctcctaccaagtctgttctggatgctaaacca
ttcagtgtctccatggagaaagttaacatagctcctcatctcgttggaaaagacaacaaa
gtcctggatcttcatgagcatgctttacaagtgcaactctatcacagcatatgctccaca
gagaaaccatgtccagcttacgcagctaaaagtggcatccaagcattgcatgatcaatcc
cagattgcaactagagaccgtacggctggcctgagcagggaccgtgaagccttggaacat
gccgccaatgtgtgggatctgatggtggcattgtggggcagattacccgaggaggaagat
gatggagaggatctagaccgtgaaggttacccataccgcaaagccagacgtgaagcattc
tctcgctggttggctgctactgcacacaacagggtacaggtggaagtcagtaattcaaaa
ttcaaggatctggggcatgcggaagcagtcttctccctaatgagtggtcaacaaatcagt
gaagctgcaagagctgctcaaaagtcaggtgatcacagattagctctcttattggctcaa
gctgggtgtagtcatgaagtacgacaactggttaccaagcaacttagcgattggtttgag
atcaaggctgatcagtttgtggcaccacagtatttaagaatttatgcattacttgcaggc
cagttggtctggtcatcctcaataggaacaataaatacatgtcaaacattagattggaag
agagcattagctgttcatttatggcatttatgcactccagtagcttccatctcagatgcc
ctccaggaatatgaaaatgggttcaaaggtcatacaagtgttggtaattactgcaaacca
ccacgtccaccttacatggagaataatcccggtctctatggagacttagacgacaccgct
gatgaggagtctatgatgatgtcagaagaaggggatggagttggagatcgtgaatttgtt
gtgagggacatgtgctatcatctgcttaagttgtacagcaataggggtcataggttagag
agagtgttggcacctactacacattctggctatcagctagattatagacttagttggcat
gttttgcaagttttacaagctgtaggctattctcacatatccgagtattacttgacacga
ctacatatcagctatgcgtcacaactagaggcattaggactatggcactgggctatattt
gtactgctgcatatacccaataacgaaaggcgtgagcatgctgtacgtgaagtgttgagt
cgtcagtgtagtcttttacgcagtgaggagaacgcagccaaggaacagttcttgattcat
agactcaatatgcccgttgcatggatacatgaagccaaggctttacgggctctgtatgag
gtccggcatcatgaccgtgcttggcatctgttgaaagctggtcactggaatgatagtcat
tctgttatcatacaacatcttgctgctgatgcagtcattaatgaaaactatgaatatctc
aaagggatgttgtcagagcttgccccagatgatcgtagcattacaatacaagactgggac
accaatggtcaggtgtatttagacttcattaacatggaacagaaagtgcagtcgttggtt
caaggcagcaccaccatatacgagctggagaaactgcacccagacatagcatcactgtgt
aaccgtgtgggaaatcttcagtgcatcactgcaaaggatcggttgtgtcagtcacagatt
tccaagagaactggcaatatgatgaagattgtgctcaaacttcagcagcagggtcttagt
cctggtgactccttacctgatatcagcattccgtcacgtctcctggctccacacattggt
aaactccccatgccagaagactacagtctacaagaactacgccaattgacaaggagttac
acggtcgaactcactgcttag
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