Amphiura filiformis: 140161192
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Entry
140161192 CDS
T10871
Name
(RefSeq) nucleoporin p54-like
KO
K14308
nuclear pore complex protein Nup54
Organism
afil Amphiura filiformis
Pathway
afil03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140161192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140161192
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
140161192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
140161192
NCBI-ProteinID:
XP_072040742
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All DBs
Position
9:55509623..55524558
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AA seq
568 aa
AA seq
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MSFFGNQSATTSKPSFGFGTSTTSSGFSFGAAKTSAPTFSFGTGAASTTSGSLGFGTTTT
SAASSGFSFGSGTGFGSTATGTGTTGFGFGANKGLGTTTTSGTTGFGFGSGLGGFGATKT
TGSSLLGGGFGTTTTTSAGTGFGFGTGTTGGFGGFGTGLGTQQQQQQQQQLQQQQQQQGV
DGNLLNIASALSMPVIYGDERDVIIAKWNQIQAFWGTGKGYFNQQNAVEFNPENPFCRFK
TVGYTVKPCTRDEDGMIILHFKKKESEIRSQQQQLVDSLFRILGSNQSLSVCVEDVRSLP
DGKTEVVIYILERSATGLSKRIPASQLFTHLSQYQMKNQLGQLGVVEMVPKLAVSGAQLD
AYLNNSPLGYDPRLWRQARLDNPDPESLIPVPMVGFHTLKSRLENQEQQTKQQQARLDLI
GKDIETLQHNQDTIHAKIAEYKRRHQELSHRVLQVMVRQEVQRKLGIAIQIEEEQLHTNL
ETVQAELNAPAQMKGRLNEMMSQVRLHSHVGGRRGDEQYQISPELQQEIRQHLKQQQEGL
SHLINTIKDDVEDLKLIDTGLEEASLVR
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgtctttctttgggaaccaaagcgctaccacttcgaagccatcttttgggtttggaaca
agcacaacttcttcaggtttttcatttggtgctgccaagacttcagctccaacattttca
tttggtactggtgcagccagtacaactagtggaagccttgggtttgggacaacgactaca
tctgcagcgtcatctggcttcagttttggtagcggcactgggtttgggagtactgctact
ggcacagggaccacaggatttgggtttggagctaataaaggtctgggtacaactacaaca
tcaggaaccactggttttggatttgggtcaggtcttggtggttttggagcaactaaaaca
actggttcttcattattaggtggtggatttggcacaactactaccactagtgcaggcaca
ggctttggatttggtacaggcacaacaggtggttttggtgggtttggaactgggcttggg
acacagcaacaacaacagcagcagcaacaattacagcagcaacaacagcagcaaggtgta
gatggcaacttattaaacatagccagtgcactgtccatgcctgtcatctatggtgatgag
agagatgtaattattgccaaatggaatcaaatacaggcattctggggaactgggaaaggc
tatttcaaccagcagaatgctgtggaattcaacccagaaaatcctttctgtagatttaag
actgtcggatatacagtgaaaccatgcacaagggatgaagatggcatgatcatcttgcac
ttcaagaagaaggagtctgaaatacgaagtcaacagcagcagctggtggatagtctgttc
cgcatcttggggtcaaaccaaagtctgtcagtgtgtgttgaggatgtcagatctttacca
gatggaaaaactgaggtagttatctacatcttagagcgctctgccactggcctttccaaa
cgcattcctgcatcacagttgtttacccatctaagccagtaccaaatgaagaaccagcta
ggacagttgggtgttgttgagatggtgcctaaactagctgtatcaggtgcacaactagat
gcctatcttaataactctccccttggttatgatccaagattatggagacaagcaagattg
gataatcctgatccagaaagtttgataccagtaccaatggtaggctttcacacacttaag
agcagattggaaaaccaagaacaacagaccaaacagcagcaagcaagattagatttgatt
ggtaaagacattgagacattacagcataatcaggacaccatccatgccaagattgctgag
tacaagagaagacaccaggaactctcacatagggtactacaggtcatggtgagacaagaa
gtgcaaagaaagctgggaattgctattcaaattgaagaggaacaactgcatacaaacttg
gaaacagtgcaagcggagttgaacgcccctgcacaaatgaagggtcgtttaaatgaaatg
atgtcgcaagtaagattacatagccatgttggtggtcgacgtggagatgagcagtaccag
atatcaccagaactgcaacaagaaatcagacagcatttgaagcaacaacaagagggcctg
agtcatctcatcaataccatcaaggatgatgtggaagatctgaaactcatagacacagga
ctggaagaagcaagtttagtcagatga
DBGET
integrated database retrieval system