KEGG   Amphiura filiformis: 140162686
Entry
140162686         CDS       T10871                                 
Name
(RefSeq) THO complex subunit 3-like isoform X1
  KO
K12880  THO complex subunit 3
Organism
afil  Amphiura filiformis
Pathway
afil03013  Nucleocytoplasmic transport
afil03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:afil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140162686
  09122 Translation
   03013 Nucleocytoplasmic transport
    140162686
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:afil03019]
    140162686
   03041 Spliceosome [BR:afil03041]
    140162686
Messenger RNA biogenesis [BR:afil03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     140162686
Spliceosome [BR:afil03041]
 Complex C
  Other components
   EJC/TREX
    140162686
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    140162686
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st WDR55 ANAPC4_WD40 EIF3I Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_RIG_2nd eIF2A Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_1st Beta-prop_IFT122_1st Beta-prop_Vps41 WD40_MABP1-WDR62_2nd Beta-prop_EML WD40_MABP1-WDR62_1st RMC1_N WD40_RFWD3 Beta-prop_TEP1_C Beta-prop_HPS5 Beta-prop_WDR75_1st Beta-prop_WDR35_TULP_N Tricorn_2nd NBCH_WD40 B-prop_COPA_B_2nd WDR90_beta-prop_4th Beta-prop_DCAF12 Beta-prop_NUP159_NUP214 PD40 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_ACSF4 Beta-prop_ELP1_1st Cytochrom_D1 PROPPIN Beta-prop_WDR41 KNTC1_N Beta-prop_IFT122_2nd Beta-prop_NWD2_C Beta-prop_At4g14310 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 140162686
NCBI-ProteinID: XP_072042057
LinkDB
Position
10:25356744..25384889
AA seq 322 aa
MGDILEETRNHFQHNNRTKEYSGHSAKVHSVAWSCDGKMLASGSFDKTVCLYSLDRDRLS
REGTLRGHTDSVDQLCWHPSNPELFVTASGDKTIKIWDARQSKTIATINTKGENINISWS
PNGQTIAVGNKEDLVTFVDVKTHKIRAEEQFKVEVNEISWNNKNDLFFLTNGHGCINILS
YPELKQLHVLNAHPANCICIKFDPSGKYFATGSADALVSLWDVEEFVCVRTFSRLDWPVR
TLSFSHDGQLLASASEDLVIDIAHVETGEKVAEVPCETPTFTVAWHPKKPLLAFACDDKD
KYNRDRDAGTVKLFGLPSSSDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atgggggatattttggaagaaactcgcaatcattttcaacataacaaccgaactaaagag
tatagtggtcattcagcgaaggtgcattctgtagcatggagttgtgatggcaaaatgttg
gcctcagggtcgtttgataagactgtgtgcctttattcgctggatagagatcggctgagt
cgagagggaacattacggggtcacactgatagtgttgatcagctgtgttggcatccaagt
aacccagaactatttgtgacagcctcaggagataagacgatcaagatatgggatgcaagg
cagtccaaaacgatagccaccatcaacacaaaaggtgaaaacataaacattagttggagt
cccaacggtcagaccatcgctgtaggaaacaaagaagacctcgtcacatttgtcgacgtc
aagactcacaaaatcagagcagaagaacaattcaaagtagaagtgaacgagatatcgtgg
aataataaaaatgacctgttctttctaacaaatggtcatggttgtatcaatatactcagc
tatccagaattgaaacagctccacgtattgaatgcccacccagccaattgtatctgcatc
aagtttgatccttctggcaagtactttgcaacgggcagtgcggatgctttggtcagctta
tgggacgtggaagagtttgtttgtgtcaggactttctcaagattggactggccagttagg
acactaagttttagccatgatgggcagctgttagcatctgcttctgaagatctggtcatt
gacatagcacatgtagaaacaggggaaaaagtagctgaggtaccgtgtgagacaccaaca
ttcacagtggcttggcatcctaagaaaccgctactagcatttgcctgcgatgataaagat
aaatataacagggatagagatgctgggactgttaagttatttggactacctagctcatca
gattcatga

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