Amphiura filiformis: 140163030
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Entry
140163030 CDS
T10871
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
afil Amphiura filiformis
Pathway
afil03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
140163030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afil03021
]
140163030
03036 Chromosome and associated proteins [BR:
afil03036
]
140163030
Transcription machinery [BR:
afil03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
140163030
Coactivators
SAGA/TFTC/STAGA complex
140163030
Chromosome and associated proteins [BR:
afil03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
140163030
STAGA complex
140163030
TFTC complex
140163030
SAGA complex
140163030
SLIK complex
140163030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
TFIID_NTD2
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_SCAP
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_Nup120_160
Beta-prop_DCAF4
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
WD40_RFWD3
WDR54
DUF5888
Motif
Other DBs
NCBI-GeneID:
140163030
NCBI-ProteinID:
XP_072042472
LinkDB
All DBs
Position
10:complement(53750939..53788748)
Genome browser
AA seq
598 aa
AA seq
DB search
MDLEKNVTMKRVNSEQIQAAVLQYLKRRNYIDTSADNFSKKSIKLTESLTSMAAQAAADR
EMGALNMVSCTTCEADGDVYEEQFNKLKCFIDESLEEYKSDLQGLLYPLFVHLFLEMIYG
GHKSAAHSLYNKHHSVFIEMSEHSELVRSLTGVMNSMDLLTNPYLTAFRESKYVLSISKE
SLDYLMRYLQSQDTSVILKVLNLNIHMQVRGTFRNTDFQIDNEGPNNIPTTQQAPPTQDS
SQSGSNDSVSELASLRETIEKVRQGPPTLPSILLYSLINAYQGLCCTNISQDSTLLIGGF
EDASMKAWSLSPKKLKTARHHVDVSTVHLAGDCFDDIIREDSVGSESKVLRGHSGPVYGC
SISPDKNHIISCSEDTTVRSWNTTTYTNTCIYRGHNYPIWDVEFSPFGTYFATACKDHTA
RLWTLERTYPLRIFAGHITDVDCVRFHPNCKYLATGSSDKTVRLWNTLDGKCVRLFNNHR
STVLSLAFSNDGKYLASAGEDRRIKLWDLGMGSLFKELRGHTDIVHSLCFSPDSSMLASG
GIDNSIRIWDVRHNFSNKQSESSASPELLSVYSTRSTNIQNIHFSKCNLLLAAGSQQS
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggatttagagaaaaatgtcacaatgaagcgagtgaatagtgagcagattcaggctgca
gttctgcagtatttgaagagacgaaactatattgataccagtgctgataattttagcaag
aaatcgataaagctaacagaatcattaacgtctatggcagcgcaggctgcagctgatagg
gagatgggtgcattgaacatggtttcatgtacaacatgtgaggcagatggggatgtttat
gaagaacaattcaacaaattgaaatgcttcatagatgagagtctggaagaatacaagagt
gatcttcagggacttctctatccattgtttgtacatttatttcttgagatgatttatgga
ggacataaatctgcagctcacagtctctacaacaaacatcacagtgttttcattgaaatg
tcagagcacagtgaacttgtgcggagtttgaccggtgtaatgaatagtatggacctcctc
accaacccatatctaacagcatttagagaaagcaagtatgtgctctccataagcaaggaa
tcgttagactacctcatgcgatatctacaaagtcaagacacgtccgtcatactcaaagta
ctcaacctaaatattcatatgcaagtgcgtggcacatttcggaacaccgacttccaaatc
gacaacgaaggaccaaataacataccgacaactcagcaagcacccccaacgcaagattca
agtcagtcaggaagcaacgattcagtatctgaattagcatctcttagggagactatagag
aaagtacggcagggtccgccgacgttaccgtctattctattgtattcattaattaatgca
tatcaaggattatgctgcacaaatatatcccaggattcaacgctccttatcggaggcttt
gaagacgcatccatgaaagcatggagtctatcaccaaagaaactgaaaaccgcccgacac
catgtagacgtgtcaacagtacaccttgctggggattgttttgatgatatcatccgtgaa
gacagtgttggttcagaaagtaaagtattgcgtgggcacagcgggcctgtgtatggatgc
agtatatcaccagataaaaaccacattatatcatgctcagaagatacgacagtacgttca
tggaatactaccacctataccaacacctgcatatatcgaggtcataactaccccatctgg
gatgttgaattcagtccttttggtacatattttgccacagcatgtaaggatcacactgca
aggttatggacactagagagaacttacccactgaggatatttgcaggccatattactgat
gtagattgtgttagattccatccaaactgcaagtacctagctactggttcaagtgataag
acagtaagactatggaatacattagatggcaaatgtgtcaggctattcaacaaccataga
agcacagttctgagtctggcattttctaatgatggaaagtacttagcctctgcaggtgaa
gatcggcggatcaaattgtgggaccttggaatgggcagtctattcaaggagttaagagga
catacagatattgtacatagtttatgttttagccctgatagctctatgctggcatcaggt
ggtatagataactcaatcagaatatgggatgtacggcataacttctctaataaacaatct
gagagcagcgcatctccagagttactcagtgtgtattcaacaaggtctaccaatatacag
aacattcatttctctaaatgcaacctgttgctagcagctggcagtcaacagtcatga
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