KEGG   Amphiura filiformis: 140163208
Entry
140163208         CDS       T10871                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
afil  Amphiura filiformis
Pathway
afil03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:afil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    140163208
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:afil03021]
    140163208
   03036 Chromosome and associated proteins [BR:afil03036]
    140163208
Transcription machinery [BR:afil03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     140163208
   Coactivators
    SAGA/TFTC/STAGA complex
     140163208
Chromosome and associated proteins [BR:afil03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     140163208
    STAGA complex
     140163208
    TFTC complex
     140163208
    SAGA complex
     140163208
    SLIK complex
     140163208
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 TFIID_NTD2 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_EML Beta-prop_WDR36-Utp21_1st CFAP251_N WD40_MABP1-WDR62_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_TEP1_C DSE1_N Beta-prop_RIG_2nd Beta-prop_VPS8 ASA1 Beta-prop_WDR41 Beta-prop_SPT8 Beta-prop_Nup120_160 Beta-prop_EIPR1 PAC11 Tricorn_2nd Beta-prop_NOL10_N Beta-prop_DCAF4 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st WD_LRWD1 TRM82_WD Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N WD40_RFWD3 WDR54
Other DBs
NCBI-GeneID: 140163208
NCBI-ProteinID: XP_072042704
LinkDB
Position
10
AA seq 598 aa
MDLGKNVTMKRVNSEQIQAAVLQYLKRRNYIDTSADNFSKKSIKLTESLTSMAAQAAADR
EMGALNMVSCTTCEADGDVYEEQFNKLKCFIDESLEEYKSDLQGLLYPLFVHLFLEMIYG
GHKSAAHSLYNKHHSVFIEMSEHSELVRSLTGVMNSMDLLTNPYLTAFRESKYVLSISKE
SLDYLMRYLQSQDTSVILKVLNLNIHMQVRGTFRNTDFQIDNEGPNNIPTTQQAPPTQDS
SQAGSNDSVSELASLRETIEKVRQGPPTLPSILLYSLINAYQGLCCTNISQDSTLLIGGF
EDASMKAWSLSPKKLKTARHHVDVSTVHLAGDCFDDIIREDSVGSESKVLRGHSGPVYGC
SVSPDKNHIISCSEDTTVRSWNTSTYTNTCIYRGHNYPIWDVEFSPFGTYFATACKDHTA
RLWTLERTYPLRIFAGHITDVDCVRFHPNCKYLATGSSDKTVRLWNTLDGKCVRLFNNHR
STVLSLAFSNDGKYLASAGEDRRIKLWDLGMGSLFKELRGHTDIVHSLCFSPDSSMLASG
GIDNSIRIWDVRHNFSNKQSESSASPELLSVYSTRSTNIQNIHFSKCNLLLAAGSQQS
NT seq 1797 nt   +upstreamnt  +downstreamnt
atggatttagggaaaaatgtcacaatgaagcgagtgaatagtgagcagattcaggctgca
gttctgcagtatttgaagagacgaaactatattgataccagtgctgataattttagcaag
aaatcgataaagctaacagaatcattgacgtctatggcagcgcaggctgctgctgatagg
gagatgggtgcattgaacatggtttcatgtactacatgtgaggcagatggggatgtttat
gaagaacagttcaacaaattgaaatgcttcatagatgagagtctggaagaatacaagagt
gatcttcaaggacttctgtatccattgtttgtgcatttatttcttgagatgatttatgga
ggacataaatctgcagctcacagtctctacaacaaacatcacagtgttttcattgaaatg
tcagagcacagtgaacttgtgcggagtttgaccggtgtaatgaatagtatggatcttctg
accaacccatatctaacagcatttagagaaagcaagtatgtgctctccataagcaaggaa
tcgttagactacctcatgcgatatctacaaagccaagatacatccgtcatactcaaagta
ctcaacctaaatattcatatgcaagtgcgtggcacatttcggaacaccgacttccaaatc
gacaacgaaggaccaaataacataccaacaactcagcaagcgcccccaacgcaagattca
agtcaggcaggaagcaacgattcagtatctgaattagcatctcttagggagactatagag
aaagtacggcagggtccgccaacgttaccgtctattttattgtattcattaattaatgca
tatcaaggattatgctgcacaaatatatcccaggattcaacgctccttatcggaggcttt
gaagacgcatccatgaaagcatggagtctatcaccaaagaaactgaaaactgcccgacac
catgtagacgtgtcaactgtacaccttgctggtgattgttttgatgatatcatccgtgaa
gacagtgttggttcagaaagtaaagtattacgtggacacagcgggcctgtgtatggatgc
agtgtatcgccagataaaaaccacattatatcatgctcagaagatactacagtacgttca
tggaataccagcacctataccaacacctgcatatatcgaggtcataactaccccatctgg
gatgttgaattcagtccttttggtacatactttgccacagcgtgtaaggaccacacagca
aggttatggacactagagaggacgtacccactgaggatatttgcaggccatataactgat
gtagattgtgttagattccatccaaactgcaagtacctagctactggttcaagtgataag
acagtaagactatggaatacattagatggcaaatgtgtgaggctattcaacaaccataga
agcacagtgctgagtctggcattttctaacgatggaaagtacttggcctctgcaggtgaa
gatcggcggatcaaattgtgggaccttggaatgggcagtctattcaaggagttaagagga
cacacagatattgtacatagtttatgttttagccctgatagctctatgctggcatcaggt
ggtatagataactctatcagaatatgggatgtacggcataacttctctaataaacaatct
gagagcagcgcatctcccgagttactcagtgtgtattcaacaaggtctaccaatatacag
aacattcatttctctaaatgcaacctactgctagcagctggcagtcaacagtcatga

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