Amphiura filiformis: 140164419
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Entry
140164419 CDS
T10871
Name
(RefSeq) THO complex subunit 5 homolog B-like
KO
K13174
THO complex subunit 5
Organism
afil Amphiura filiformis
Pathway
afil03013
Nucleocytoplasmic transport
afil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140164419
09122 Translation
03013 Nucleocytoplasmic transport
140164419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afil03019
]
140164419
03041 Spliceosome [BR:
afil03041
]
140164419
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
140164419
Spliceosome [BR:
afil03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140164419
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
RWD
Motif
Other DBs
NCBI-GeneID:
140164419
NCBI-ProteinID:
XP_072043799
LinkDB
All DBs
Position
11
Genome browser
AA seq
695 aa
AA seq
DB search
MSTTISLKKKRRTTSKSDGEATTTSTVREVKKLKRIGTSELQGPDVAASSEEKEIEARDF
GSDLELHRKTCSDIRQLMEDIKTAKDNDESAASIEQKRVKATLQFVTLKKLNRLAHLRCK
KARETTMGVKQRVDSLHLQLQNLLYEVMHVEREITKCREFKSTDEDIELVDTDDFYKDAP
MKISKPDITKTDQHKQQLARLDWELEQRKRLAKKFKECQSNTDNMIREIQTKQEYIDSLQ
PRLEKILETTIPVQEYLSMPFHEKQTQHQTARLLPRPLYILFVQGNAYREACDPSMSLKI
EGDTEAVRSTISVASLLLDYESDSDTEEALSESKRRRKTVGNRLEEKRQKVLTKHPLQVT
MTLKLKDGTTLTLTFSYLVVLQIVTVQIDLKPGNSSLVSSISASDLLSPSDLLTCLYPGD
DGKESPNPTNEYQLGKLGMESLSTYISQTGHPYRWAQWLAGLDFLPDSGEETRPETSIGA
SHMEDTVRALYDRIHARLAIQKQLASLERNSVPVPSQSMRLFPAKICTQLTSWKTITQDD
VEGFHFTRESPIKELIVESHKLFLATCERGSAKLQAVVLLSLDYPTTPPQFMIGITWHGD
HNANNDHDIREMEEELNLHYQELTFNTADDYLLANQVQRLMMCFDVYLETKTMGDEGAER
PLEFAREKMYMRITRGRSRSRPYRYYPQQGYFTHR
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccacaatttcattgaaaaaaaagcgacgaactacaagtaaatctgatggagaa
gcgacgactacaagtactgttcgcgaagttaagaaattgaaacgtattggaacctctgaa
cttcagggcccagatgttgcagcatccagtgaggagaaagagatagaagccagggatttt
gggagtgacttggagcttcacaggaagacatgtagtgatatcagacaactcatggaagac
atcaaaactgccaaggataacgatgaatcggctgcatccattgagcagaagcgagtgaaa
gccaccttacagtttgtgacgttgaagaaactgaaccgtctggcccatctacggtgtaag
aaggctagagagaccaccatgggtgtgaaacagagggtggatagcctgcatctacagcta
caaaacctactctatgaagtcatgcatgtggaaagagaaatcactaaatgtagagagttc
aagtctacagatgaggatatagaactagtcgacacagatgatttctacaaagatgctcca
atgaagatatctaaaccagacatcaccaaaacagatcaacacaagcaacaattagcacgg
ctggattgggagctggaacaaaggaaaagattggccaagaagttcaaggaatgccaaagc
aacacagataacatgattagggagatacagactaaacaagagtacattgacagcttacaa
ccaagactggagaaaatactagagaccaccataccagtacaggaatatctctccatgcca
ttccatgagaaacaaacccagcaccagacagctagactccttcccagacccttgtatatc
ttatttgtacagggaaatgcatatcgggaagcatgtgatccatccatgtctttgaagatt
gaaggtgacacagaagctgtaaggtcaaccatctctgtggcatctttgttgttggactat
gagagtgactcggacactgaggaagccttatcagaatctaaacgaagaagaaagacagtt
ggcaaccgtctagaagagaagagacagaaagtgttgaccaaacatccactgcaagtcaca
atgacactgaaacttaaagatggtactacattgactctgaccttttcctacttggtggtt
ctgcagattgttactgtacagatagatctcaaaccaggaaactcatcactggtatcatct
atatcagccagtgaccttttgtctcccagtgatttactgacctgcctctacccaggggat
gatggcaaggaatcccctaatccgaccaacgagtatcaactcgggaaacttggaatggaa
tctctcagtacctacatcagtcaaacaggacatccatatcgttgggctcagtggttagca
gggttagacttcttacctgatagtggtgaagagacaaggcctgaaacatctatcggtgct
agccacatggaggacactgtgagggcgctttatgatcgtatccatgcacgactagcaata
cagaagcagcttgcttctcttgagcgtaacagtgttccggttccttctcagtctatgagg
ctattccctgctaagatatgcactcagctaacctcatggaagactattactcaagatgat
gtagagggttttcacttcaccagggaatctcccattaaagaactaatagtggagtcacac
aaactattcctggctacgtgtgagagaggatcagccaaacttcaagcagtagtactgctg
agtctagattacccgacaacaccaccacaattcatgattggtatcacatggcatggggat
cacaatgctaacaatgatcatgatatcagggaaatggaagaagagttaaatctgcactac
caggagctgactttcaacacagcagacgattacctgctggccaatcaggtgcaacgtctc
atgatgtgctttgatgtctacctagaaaccaagaccatgggagatgaaggagcagagcgc
cctctggaatttgctagggagaagatgtacatgaggattacaaggggcaggagtcgtagc
agaccatatcgatactacccacagcagggatacttcacacatcgatga
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