Amphiura filiformis: 140166165
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Entry
140166165 CDS
T10871
Name
(RefSeq) uncharacterized protein isoform X1
KO
K08131
collagen type IX alpha
Organism
afil Amphiura filiformis
Pathway
afil04512
ECM-receptor interaction
afil04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
140166165
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
140166165
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
afil00535
]
140166165
Proteoglycans [BR:
afil00535
]
Extracellular matrix (ECM) proteoglycans
Others
140166165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Toxin_R_bind_N
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
140166165
NCBI-ProteinID:
XP_072045660
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Position
12:38636666..38712140
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AA seq
984 aa
AA seq
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MWDAGMLRGPGRPTEWLLRATLVILAFIHSSKSQLNVECPEFQIGENDLPGWDVIRLFRL
DDPSIANGVRVVEGSNELQKAYKLSKTNNLRASTRDLFPDGLPEEFSFVASFRMNTNSVK
KDWVLWQIRDAGNTPQVGIRLNGGEKALQFIYVDTNRQLQSVTFRNVENLFDTNWHKLHL
SVMNDRVSVYIDCKLKSTVAIQPRGIIDTRGEVSIGRTLRNNEPVVYDLQTLMIHCDPKY
AEIDYCDEFYEQEITTPTEGGDCNCPPGPKGEQGDSGSRGIEGVPGAPGAPGLPGPGGPP
GAAGPQGEGGFRGEPGLAGPPGGRGRRGDPGSIGPAGLPGAPGLPGDPGLFGAKGEPGNP
GIPGPLGEPGTGSGTGGNGQKGAKGSTGNKGEIGLPGLNGVKGEEGSTGRTGRAGSPGRN
GNSGTDGVPGLAGPPGPPGPPGIPGRTISLEQRGEGEAEVLPWFNVVELLNQGPPGEAGI
PGIPGTQGPPGPSGVAGNDGDRGPRGEIGQTGPRGPPGAPGTGGLVGPIGPPGPPGPVGD
TGPQGSQGPPGLPGVDGQRGPVGNPGTRGNPGTPGPIGPMGTTGDTGSQGASGEKGSKGD
RGITGDRGGYGEKGIKGDLGPSGPAGPRGDLGPQGLTGPAGPTGIPGEPGKDGAKGDMGD
TGDRGPIGPAGPQGVPGVIGPKGAEGDQGRQGVIGEQGTKGDAGRDGDVGLPGPIGDRGN
TGTPGLRGPQGIPGEKGDRGNVGSQGAQGRRGETGVTGPPGTPGPEGKMGDRGDPGVQGP
VGPVGLPGPTGNGGPKGDRGNPGDKGFKGSAGEPGKVPSETEIEVIVERVLQRQLALIAS
KLTGPPGQPGQSIRGRPGSIGRVGPAGLVGQPGPDGSQGPAGRRGSPGEAGPAGPQGPRG
PAGAKGEVGPSKKGDPGTPGYPGDPGPAGYGTPGKDGATGPMGPPGPRGIQGQRGNIGPQ
GHCQYCQPAYNPYQYQNWALNNKG
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgtgggacgccgggatgttaaggggccccggtagaccgactgagtggttacttagagca
acactggtcatcttggcttttatccacagtagtaaatcgcagctgaatgtagaatgtcct
gaatttcaaataggtgaaaatgatttaccaggctgggatgttatccggctctttcggttg
gacgacccatcaattgctaacggtgttagagtagtagaaggttctaacgaattacagaaa
gcttataaacttagcaagactaataatttacgggcatcaacaagagatttgtttcctgat
ggtcttccagaagagttttcatttgttgcatctttccgtatgaacacaaattcagtgaag
aaagattgggtactatggcagattcgggacgctggtaacaccccacaagtcggtattcgt
ctcaatgggggagaaaaagcattacaatttatttatgttgacaccaataggcagcttcaa
agtgttacatttagaaatgtggaaaatctttttgatacaaattggcataaattacatctg
agtgttatgaatgatcgggtgtcagtgtatatagattgtaaactgaaatctactgtagcc
attcaaccacgcggtattatcgacacacgaggcgaagtcagtattggcagaacgctaaga
aataatgaacctgttgtatatgaccttcagacattaatgatccattgtgatcctaaatat
gcagagattgattattgtgacgagttttacgaacaggagattacaactcctaccgagggt
ggcgattgtaactgtcctcccggaccaaaaggagaacaaggtgattctggctcaagaggt
attgaaggtgtaccaggagcaccgggggcacctggtctcccaggccccgggggaccgcct
ggagcagctggaccacaaggcgaaggaggttttagaggtgaacctggtttagcagggcct
ccaggtggaagaggacgcaggggtgacccaggttctattggtcctgcaggtcttccggga
gcaccaggattacccggagatccaggtctttttggtgcaaagggtgagccaggtaatcca
ggtataccgggaccactgggtgagcctggaacaggctcagggactggtggaaatgggcag
aaaggtgcaaagggttcaacagggaacaaaggtgaaattggtttaccaggtttgaatgga
gtcaagggagaagaaggatctactggtcgtactggaagagctggaagccctggtagaaat
ggtaactctggcactgatggtgtaccaggtttagccggaccaccaggcccgccaggacca
ccaggaattcccggacgcaccatatctttggaacagcggggcgaaggagaagctgaagtt
ctgccgtggtttaatgttgttgaattgttaaaccagggcccgccaggggaagcaggaata
ccaggaataccaggaactcagggtccaccgggtccatcgggtgtagcgggaaatgatgga
gacaggggtcccagaggagaaatcggtcaaactggtccacgcggacctccaggagctccg
ggaaccggtggcttggtaggacctattggaccacctggaccaccaggacctgttggagac
accggcccacaaggatcacaaggtcccccaggattgcctggagtcgatggacaacgagga
ccagtggggaatccaggaacacgtggtaaccctggtactccaggaccaatcggaccaatg
ggtactactggtgataccggctcgcaaggcgcatcaggtgaaaagggatcaaagggagac
cgtggtattaccggagacaggggtggatatggagagaaaggaatcaagggtgatttgggt
ccatcaggacctgcaggaccacgcggtgatttgggaccacaaggtctaactggaccagct
ggtccaacgggtattccaggtgaaccgggtaaagatggcgctaagggtgatatgggtgat
accggcgatcgaggaccaattggcccagctggtccacaaggagttcctggtgttattgga
cccaagggtgctgaaggtgaccaaggaagacaaggagttataggagaacagggtacaaag
ggagatgctggtcgtgacggtgatgttggactaccgggtcctataggagacaggggtaat
actggaactccaggactacggggtccacaaggtataccgggtgaaaagggtgacagaggc
aatgtaggatcccaaggagcccagggacgtcgcggagaaacgggagtaaccggaccaccg
ggtacaccgggtccagaagggaaaatgggagatcgtggcgatccaggtgttcagggaccc
gtaggaccagtaggcttaccaggtccaactggtaacggtggtccaaaaggagacagagga
aacccaggagacaaaggatttaaaggatcagcaggtgaacctggaaaagttccttcagaa
actgaaatagaagtcatcgttgaaagagttcttcaaaggcaattagctctcattgcatcc
aagttaacgggtccaccaggtcaaccaggtcaaagcataagaggccgaccaggatccatc
ggcagagtaggtcccgccggtctcgtaggtcaacctggtccggatggatcgcaaggtcca
gcaggaagacgaggctcgcctggagaagctggacctgctggtccacaaggtccacgtggt
cctgcaggagcaaagggagaagtgggacccagcaaaaagggagatccagggactccagga
tatccaggcgatccgggtcctgcaggctacggtacacctggcaaagatggtgcaactggt
ccaatgggccctccaggtccacgtggtatacaaggacagcgcggcaacattggtccgcag
ggtcattgtcaatattgtcagccggcatacaacccctatcaataccaaaattgggcactg
aacaacaaagggtaa
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