Amphiura filiformis: 140166248
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Entry
140166248 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
afil Amphiura filiformis
Pathway
afil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140166248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afil03021
]
140166248
03019 Messenger RNA biogenesis [BR:
afil03019
]
140166248
Transcription machinery [BR:
afil03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140166248
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
140166248
U7-dependent histone pre-mRNA processing factors
140166248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
140166248
NCBI-ProteinID:
XP_072045755
LinkDB
All DBs
Position
12:43091857..43126007
Genome browser
AA seq
688 aa
AA seq
DB search
MATSKRKTENPIPEEESDRLIVRPLGAGQEVGRSCIMMEFKGKKIMLDCGIHPGRDGLDS
LPFFDMIDPEQIDLLLVSHFHLDHAGALPYFLKKTSFRGRVFMTHATKAIYRWLLSDYVK
VSNISSDKMLYSDADLAESMDKIETINFHQEIEANGVKFWCYNAGHVLGAAMYMIEIAGV
KILYTGDFSRQEDRHLMAAEIPSIKPDVLIMESTYGVHIHEKREDRESRFTGTIHDIVNR
GGRCLIPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTYINAMNEK
IRRQIAINNPFVFKHISNLRGMDHFDDVGPSVVMASPGMMQSGLSRDLFESWCTDRRNGV
IIAGYCVEGTLAKTIMSSPEEVTTMSGQKLPLNMSVDYISFSAHTDYQQSSDFIRQLKPP
HIILVHGEGNEMMRLKTAILREYEDDPEYHIQVHNPKTTQAVELYFRGEKMAKVMGSLAT
KKPDQSTKVSGILVKRNFNYHIMAPSDLPEYTDLTVGTVTQRLSIAYQAPLSLLMHYLTQ
LSGDVEYVEINDKPGLRIFGKVTIIHEPTKNMVVLEWLANAVNDMYADAVSAVIVRVATD
PQAQKLKHLPPKNDPQIFSDRLMRLLQDMFGAKAVFRGSLEELSVKIEGKEATIDSDTLE
VVCTDKPMHQMITSAIQRLHNAVEPVQS
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccagcaaaaggaaaacagaaaatccaattcctgaagaagaaagtgaccgacta
atcgtccgtcctttaggagctggacaagaggttggtcgatcatgcattatgatggaattc
aaaggaaagaaaataatgcttgattgtggcatacatccagggagagatggactggactct
ttaccattctttgatatgattgatccagaacagattgacctgttacttgttagtcacttc
catttagatcatgctggtgctttaccatatttcctcaagaagacaagttttcgtggacgt
gtgtttatgacccatgccacaaaagccatctataggtggctattatcagattatgtcaaa
gtcagtaacatttcctcagataagatgctgtactcggatgcagatcttgctgagagtatg
gataaaatagagaccattaatttccatcaggagatagaggccaatggggttaagttttgg
tgctataatgctggtcatgtactaggagctgctatgtatatgatagagattgctggagtc
aagatcttgtatactggagacttttcccgacaagaagacagacatttaatggcagctgaa
attccatccatcaaaccggatgtccttataatggaatctacatacggtgttcatattcat
gaaaagcgtgaggatcgggagtctcgattcactggcactatccacgacatagtcaacaga
ggagggcgctgtcttataccagtatttgcactcggaagagctcaggaattattgcttatt
ttagatgagtattggtcaaaccatcccgagttacacgacattccaatttattatgcatca
tccctcgcaaagaaatgtatggctgtgtatcaaacgtacatcaatgcaatgaatgagaag
attagaagacagattgcaatcaacaatccatttgtattcaagcacatctccaacttacga
ggtatggatcactttgacgatgtagggccctcagtggttatggcaagccctggtatgatg
cagagtggtctctctagagatctgtttgaaagctggtgtacagacagaagaaatggagtc
attattgctggttactgtgtagaggggacacttgctaagacaatcatgtcatcgccagag
gaggttacaacaatgagtggtcagaagctgcctcttaacatgtctgtagattacatctca
ttctcagcacatactgactaccagcagagtagtgatttcatcaggcagctaaagccacca
cacattattttagttcatggtgagggcaatgagatgatgaggttaaagacggccatcttg
agagagtacgaagatgatccagagtatcacatccaagtacacaaccccaagaccacacaa
gctgttgagttgtacttcagaggagagaaaatggcaaaggtcatgggtagcctagcaacc
aagaaaccagatcaaagtacgaaagtgtcaggtattctcgtcaaacgaaacttcaactac
cacattatggcgccatcagacttgccagaatacacagatctcaccgtcggcacggtaaca
caacggttgagtatcgcttaccaggctccattgtcgttactcatgcattacctgacccag
ctctccggggacgtggagtatgtggagatcaacgacaagccaggattgcgcatatttggg
aaagtgactattattcatgagccgaccaaaaatatggtcgtgttagagtggttagccaat
gcagtcaatgatatgtatgctgatgcagtgagtgctgtcatagtcagggtagctacagat
ccacaggcacaaaaattaaaacatctgccacccaaaaatgacccacaaatcttcagtgat
agattaatgagactgcttcaagacatgtttggtgccaaagctgtgttccgtggaagtctg
gaggagctatctgtcaaaattgagggcaaagaagcaactattgactctgacacattggaa
gtggtatgcacagataaaccaatgcatcagatgattacatccgccatccaaagattacac
aatgccgtagagcctgtgcaaagttaa
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