Amphiura filiformis: 140166291
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Entry
140166291 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
afil Amphiura filiformis
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
afil03009
]
140166291
Ribosome biogenesis [BR:
afil03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
140166291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_EF3_N
DNA_pol_phi
Cytomega_UL84
Myc_N
Motif
Other DBs
NCBI-GeneID:
140166291
NCBI-ProteinID:
XP_072045803
LinkDB
All DBs
Position
12:46344902..46400207
Genome browser
AA seq
2336 aa
AA seq
DB search
MSRLDFPDDLLAEENVIPSLWAALVCLPSVRPLDVDQCSTKLQKLIDNLWSIVSSEQSHS
DTLLYLLSQAIVCLLQVNSSKKDKPVIEVDFVVNMLRTHPSSQHALLAADIYFRHSCQQG
HDEVVSTEILDQIFPSLQPNLSSPYHKVRLLSLRILSQFPVALPIVPDLPTQQVSVFKLC
LKAERIPITVEDYREKLKCLQRLEYGAVKYNIPIGNYQEVPLRYLLGMLYVNFKWVWQPT
IDLIKSHAYGMNKKMFWEVFGHHLQAAATKTENDFRTTGENNTQQTKPSAATQSSQEDPP
CDLTELFSRFQEGMMTSADRPDDWNYRLLMWKAMWAFADKAESCSRELVPLIFTFMKNEY
YPADVNNAPTQDIRKKGKADDNLPDQLNQEMDDDDDVITHLEEPGKPDRKRRIGAVNRCL
SAMLELFSKFRSPKSMHQESKLRELYFKLLSVKNGLIQKAALSCVMTYKYKYLIPYKENF
DALMDDKSFREALVQFSIEETNGVVQEEHREGLLPVLFRILYGKMLSKTGPGTQGKGGGS
VRRSIILRFIAGSQSEAEMDVFMDLVMGPCQHLVQDDCRLMMQDTLNTLDLSAVVPLKKQ
HSMLDTFSVIFTKLGHLIDRYRPTLLHLITCLVASYTKMLDQRNEIQPFSVNQLKNLRQV
GMQLLADFFEHFEKYPFSSNEIDCIFEAAVWPHVEKLSDESLASPTTLLKLFAVWSKNPR
LHCLLAKHPPENEELTAIPNIIALLSSATVASPVVAMVMDIVESLLMEPDFEPEDGVDEL
DVSNVRCMKIENEDQFEVPPSFGTKLLFPHVPAILEFLSTSVTVKGQSLKQGGKGELPMK
ELNILSKISVYVQDPKQCSVLITLLLPYLQKTTEKHQTIEMDILQTIRNVIKLTDEPSSF
LGSISKLLYRLTLRPSRAAVCNIFAAMASADPSLKEISNTVFMLNTWDRKRFEEPDFRKR
LEAYQMANKRLADMKTIDVQFLTPVIYISFYFIMKLDEMSLRDNASHFLMAVIDKLSKES
SSSVIFNAIIIHKYVPSIRQGFRLKSENARQELTALLARMVKCFPDHPRFTGLNSLRDDR
DIEVDFFENIRHIQHHRRMRALRRLAQHSRDGKIPAVTLNYFLLPMTTALVFDQSANKDN
NLIVEAIHTVGAIATRLSWTQYSTILKQYLSLLTKNLDMQKNAVRLVVAVLDAFHFDLSL
SEALPQNQAPNASKTHQDVKKGDDPKPKDKSEEENEEDKEEEDDDDDDESGSEEEDVVSA
EETKRQMDVALATKIHNIIVSSILPQLHGTITKKVQSEERHKKARGNMADDEEVLRVPIA
LAMVKLLQAVPKKTMHQNLPSVLLKVCQMQKSRAKDVRDISRDTLVKILDSLGITYFPYI
LKELRHALTRGYQLHVLSYTVHTLLKSLLPKLECGDLDGCLGSLIKVFNDDIFGEVAEEK
DVQGIVAKLYEARSTKGYDCYEMVAKFVGQGSLTQLILPLKEILDTTHSHKAVRRVQDVL
RRMTLGLLGNSGLVMEVMLVFIHGLVSESLPLITSVQKAEKKAASIPAPDPRLATKSVYI
LPKTPKRGDXVPQTSSKTNAHVIVDFGLQLLHMNLKRSKLISSNQQHLAMLDPFVDFLIT
CLDSKHVKITTVGLRCLTWLLRYPLPSVGNRAKELTKILFHILKNYAATGAVRSGSGNFD
LVVGCFKALTVMVRDVKQHSIDEEQLKVLLAYAEEDIHDSNRQATAFSLLKAILSRKLVV
PEIHDVMKKVRQLSVVSEAPPVRLQCRQVMLGFLLDYPLGKKLKQHLEFYVNQAAYPVET
GRESALEMLATVFSSFPQKVLCDYAGLFYVPMAARLMNEETTKCRKLTALAIKSLLQKID
VAKRDELFDITISWLDEDEKLTHKCLAAQLCGLFVEAEGADTERRIKSLLPVICERMKPE
HFQQDEDEDSGDNETEGTAREKEERQSDHLLFHLLSTLGKLLQHCGIIRNKEYRLVLNTI
WDSTQSHLMHPHSWIRLTSAQLFGSLFAAWKPEELITTATITSKPLETVEGKKQKKGKKR
KSRLVESEDGVSENPVDEVLGYLQEKTHERISDLASKFCNQLQSFYCDKDLGDQVVRNLV
FIAKVLIRIQGDQPTSTDSLDFRTASHSSSEAATNNGSENDNSGDVTNEIDDVTDKTDEV
SHRTNDNPKGIRTVDLLWLMKRMCIIASREAAKSSGPTLKRTCVVKWLAAVAVELGADRV
GPYMLIMMRPISREANDKMTQADNELRVLCEEVLELLKGMVGLQVFSQAYTSLQRQTAET
KYSRKRKKAMEAVVDPDKAAKRKIKKQQAKKESRKRKIQAMRPTYQINKKRPKHKR
NT seq
7011 nt
NT seq
+upstream
nt +downstream
nt
atgtccagacttgatttccctgatgacttgttagctgaagagaacgtcataccatcatta
tgggctgcccttgtgtgtctaccatctgttagaccccttgatgttgaccagtgtagcacc
aaactgcagaagttgattgataatttgtggagcatcgtatcgtctgaacaaagtcattca
gatacattgctgtatttgctgtcgcaagcaattgtttgtcttctgcaagttaactccagc
aagaaggataaaccggtaatagaagttgactttgttgtaaacatgcttagaacacatcct
agttctcagcatgcattgctagcagcagatatatacttcagacactcttgtcaacaaggc
catgatgaagtggtctcaacagagattctggaccaaatctttccaagcttgcagccaaat
ttgtcatctccataccacaaggtccgacttctgagcctgcgaatcttaagccagttccca
gtggccctgcccattgtgcctgatctgcctactcaacaagtgagtgtattcaagctgtgt
ctcaaggcagagcggataccaattacagtagaggattacagagaaaaactgaaatgtcta
cagagattagaatatggtgctgtcaagtataacataccaataggcaactaccaagaggtg
ccattgcgatatctgctgggcatgttatatgtcaatttcaagtgggtatggcaaccaact
attgacttgatcaagtctcatgcatatggcatgaacaagaaaatgttctgggaagttttt
ggtcatcaccttcaagcagctgctacaaagactgaaaatgacttcaggaccactggagaa
aacaatacacaacaaacaaaaccctcagctgccacccagtccagccaggaggacccacca
tgtgatttaacagaactgttcagtagattccaagagggtatgatgacgagtgcagacaga
cctgatgactggaattacaggctgcttatgtggaaagcaatgtgggcatttgctgataaa
gctgagagctgttctagagagcttgtcccgctgattttcacgtttatgaaaaatgagtac
tacccagctgatgtcaataatgctcccacccaagatatcagaaagaaaggcaaggctgat
gataacctccctgaccaattaaatcaagagatggatgatgacgatgatgtcatcactcac
ttggaggagcctggcaaaccggataggaagagaagaattggagctgttaacaggtgcctg
tcggcaatgttggagttgttcagtaaattccgtagcccaaagtctatgcatcaggagtcg
aaattgagagagctctacttcaaactcttgtcagtgaaaaatggtttgattcagaaggca
gccctgtcgtgtgtgatgacctacaaatacaagtatctgataccatataaggagaacttt
gatgctttgatggatgacaagagtttccgtgaagctttggtacagttcagcattgaggag
actaatggagttgtacaagaagagcacagggaaggcttgctacctgtactctttagaatc
ttgtatggcaagatgttgagcaagacgggaccaggaactcaaggcaaaggaggcgggtcg
gtgcggagatcaatcatattgagattcatagcaggctcgcagtctgaggcagagatggat
gtcttcatggatcttgtcatgggaccttgccaacacctggttcaagatgactgcagactg
atgatgcaagatacactgaacaccctagacttgtctgccgttgttcctttgaagaagcaa
cacagcatgttggacaccttcagtgttatttttaccaagctgggtcatctgattgatcgc
tatcgacccacactgcttcacctcatcacatgtctcgtggctagctacaccaagatgttg
gaccagagaaatgagatccaaccattcagtgtcaaccagttgaagaaccttcgccaagta
ggaatgcagctattggctgatttctttgagcattttgaaaagtacccattctcatccaat
gagattgactgtatttttgaggctgctgtttggccacatgtggagaagctatccgatgag
agccttgcaagtccgactacacttttgaagctctttgcagtgtggagcaaaaatccaagg
ttgcactgtctgcttgcgaaacaccctccagaaaatgaggagttgacagccatccccaac
atcatagcgctgttgtcatcagcaacggttgcatccccagtggttgctatggtgatggac
atagtggaaagtctgctaatggaaccagactttgaacctgaggatggggttgatgaactg
gatgtttcaaacgtgagatgcatgaagattgagaatgaagatcagtttgaagtacctcca
tcgtttggcaccaagctactgtttcctcatgtgccagccatcttggaattcctcagtacg
tctgtaacggtcaaaggtcaatcactgaagcaaggtggaaaaggggaactgccgatgaaa
gagctcaacattttatccaaaatcagcgtgtacgtccaggatcccaagcagtgcagtgtg
ctgataaccttattgctgccatacctacagaagacaacagagaagcaccagacaatagaa
atggacatcctgcagaccattcgcaatgttattaaactcactgatgaacccagcagcttc
ttaggttccatttccaagttactctatcgtctgacactgcgaccatccagagcagccgtg
tgcaacatctttgcagcgatggcatcggctgacccaagcctcaaagaaatctccaacacc
gtcttcatgctgaatacatgggacaggaagagatttgaagagccagacttcaggaagaga
ctagaggcatatcagatggctaataagaggctggctgatatgaagactatcgatgtgcaa
ttcttgactcctgtgatttatattagtttctatttcattatgaagcttgatgaaatgtca
cttcgagacaatgcgtcacatttcctgatggccgtcatcgacaagctgtccaaggaatcg
tcgtcatcggtgatattcaatgcaatcattatacacaagtatgtaccctccatcagacaa
ggcttccggctcaaatcagagaatgccagacaagagctgactgcattgttagcaagaatg
gtgaagtgcttccctgaccatccaagattcactggacttaactcactaagagatgacagg
gatattgaggtggacttctttgagaatattcgacatatccagcatcacagacgcatgcga
gctctccgacgtcttgcccaacacagcagagacggcaaaatacccgcagtgactctcaac
tatttcctgctccccatgacgacggcactagtgtttgaccaatcggcaaacaaagacaac
aatcttatagtggaagcgatacacacggtgggtgccatagcaacaaggttgtcatggaca
cagtacagcaccattttgaagcagtacttgagtctgttgaccaagaacttggacatgcag
aagaatgcagtgaggttggttgtagctgtcctagatgccttccactttgatctctcgcta
tctgaagcattacctcaaaaccaagcacccaatgcaagcaaaactcatcaggatgtcaag
aaaggagatgatcccaagcccaaagacaaatcagaggaggaaaatgaggaggataaagag
gaggaggatgatgatgatgatgatgaaagtggcagtgaagaggaggatgttgtgtctgct
gaagagaccaaaaggcagatggatgttgccttggcaaccaaaattcacaacatcattgtc
tcaagtattctacctcagttacatggtactattacgaaaaaggtacaaagtgaggagcgg
cacaagaaggctcgtggtaacatggcagatgatgaggaagtgttgagagtgcctattgca
ctagctatggtcaaactactacaggcagtgcctaaaaagactatgcatcaaaatctacca
agtgtgctgttgaaagtttgtcagatgcagaagagtcgtgccaaagatgtaagagacatc
agccgagacaccctggtgaagattttagattctcttggcattacctactttccatacatc
ctgaaggaactccgccatgccttgaccagaggataccagcttcatgtactcagttacaca
gtccacactttattgaaaagtctgttgcctaaattagagtgtggagatctagatggttgt
ttaggatcattgattaaggtattcaatgatgatatctttggggaggttgctgaggaaaag
gacgttcagggaattgtagcaaagctatatgaagcccgtagcaccaaagggtatgactgt
tatgagatggtagccaagtttgtgggtcaagggtcactcactcagctgattctacctttg
aaagagattttagacaccactcacagccacaaggcggtgcgaagagtgcaggatgtgcta
cgccgtatgacccttggtcttctagggaattctgggttagtaatggaggtgatgttggtg
ttcatccatgggcttgtcagtgaatctctaccattgattacaagtgtacagaaagctgag
aaaaaggcagcaagtattccagctccagacccacgcctagcaaccaaaagtgtgtacatc
ttgccaaagacacccaagcgaggggatnttgtacctcagactagcagcaagaccaatgca
catgttattgttgactttggactgcagctattgcatatgaatttgaaaagatccaaactg
atatcatctaaccagcaacatctagctatgttggatccatttgtggatttcctcatcacg
tgtttggactccaagcatgtcaagataaccacagtaggcctccgatgcctcacatggctg
ctgaggtaccctctaccctcagtgggaaacagagcgaaggaattaaccaaaatactgttc
cacatcctgaagaactatgctgccactggtgctgtccggtcaggttctggcaattttgat
ttggttgtcggctgcttcaaggccttgacagtgatggtacgagatgtgaaacagcactct
attgacgaggaacaactcaaggtgctactggcgtatgctgaagaagatatacatgactcc
aataggcaagccactgctttcagccttcttaaggctatcctctctaggaaacttgtggtc
cctgaaatccacgatgtgatgaagaaggtacgacagctctctgtggtctcggaagcacca
ccagtcaggctacagtgcagacaggttatgctaggttttctattggattatcctcttggc
aagaagctgaaacaacacctggaattctacgtcaatcaggcagcatatcctgtggagact
ggacgagaatcagccctggaaatgttggcaacggtattctcctcatttccacagaaagtg
ttatgcgattatgcgggactgttctatgtcccaatggcagcacgcttgatgaatgaggag
acaaccaaatgtaggaaactaacggcactggctatcaaatctcttttgcagaagattgat
gttgctaagagagatgagttatttgacatcaccatatcatggcttgatgaagacgagaag
ctgacccataaatgcttagcagctcagctgtgtggtttgtttgtggaagcagaaggggcg
gacacggagagaagaatcaagtctctactaccggtcatctgcgagaggatgaaacctgag
cattttcaacaggatgaagatgaagactctggggataatgagacagaaggtacagccagg
gagaaggaagagagacaatcagatcatctcttatttcacctgttgtcaacgctagggaaa
ctactgcaacattgtggtatcatcaggaataaggaatataggctggtgcttaatactatc
tgggattccacccagtcgcatctgatgcatcctcactcctggatccgtctgacatcagca
cagctctttggctcactctttgctgcatggaaaccagaagaactgattaccacggcaact
atcacatcaaaaccacttgagacagttgaaggaaagaaacaaaagaagggcaagaaaagg
aaatctagattagtggagagtgaagatggcgttagtgagaatccggttgatgaggtttta
ggttacctgcaggaaaaaacacatgagagaatcagtgacttggcttccaaattctgcaac
cagttacagtcattttattgcgataaagatcttggtgatcaagtggtgagaaatcttgtg
ttcatagccaaagtattaatcagaatccaaggagatcagccaacaagtacagactctctt
gattttagaactgcctcacatagcagcagtgaagctgcaaccaataatggatctgagaac
gacaactctggtgatgtcacaaacgaaattgatgatgtcacggacaaaactgatgaagtc
agtcatagaactaatgataatcccaagggtataagaacagttgacctgctgtggctgatg
aaaagaatgtgcatcatcgcatcacgggaggcagcaaagtcgtctggtccgacgctgaaa
agaacttgtgttgtcaagtggcttgcagctgtggctgtggaactgggagcggatagagtc
ggaccgtatatgttgataatgatgagacctattagtagagaagctaatgataagatgaca
caagcagataatgaactcagggtgttgtgtgaagaagtactagagctgctgaaaggcatg
gttggtttgcaagtattttcacaggcctatacaagtctacagagacaaacagctgagacg
aaatacagcaggaaacgcaagaaggctatggaggctgtggttgacccagacaaagcagct
aagaggaaaatcaagaagcaacaggccaagaaggagtcccggaagaggaagatccaagct
atgcgaccgacctaccagatcaataagaagagaccaaagcacaagagatga
DBGET
integrated database retrieval system
