Amphiura filiformis: 140166495
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Entry
140166495 CDS
T10871
Name
(RefSeq) uncharacterized protein isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
afil Amphiura filiformis
Pathway
afil04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
140166495
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
afil00536
]
140166495
Glycosaminoglycan binding proteins [BR:
afil00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
140166495
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
140166495
NCBI-ProteinID:
XP_072046075
LinkDB
All DBs
Position
12
Genome browser
AA seq
1603 aa
AA seq
DB search
MSTDGMLIFGDQPIVTGRTIQGFTGVIQQLLIIPDPNAADRLCQDYVPDCDEPETHLVER
ILRPSNADIERAPSGLQVDLGSGSVSYDYSSDYVSISNPNTGGAGNPSPGGAGNPSPGGN
PGGNPGGNPGGNTGGNTGGGPPDQLSKGQKGQKGEPGRVSYDSSPGPNGRPGPPGPQGPP
GSQGRPGPPGSKGEKGSDGRDGLNGSPGLRGPAGANVYLPQQIVNMVADGTGAKGPGAAR
NLEALRQVLEEQRLAMTGPRGPSGLSGRSGPLGPPGPDGPKGDPGGMGDLGQRGLPGNPG
PAGRSGKRGRPGTDGPLGIRGPMGLKGARGFDGLPGLPGIKGSLGRPGQRGVIGPGGERG
RNGDDGERGDSGPVGPPGPSGSTGPRGMPGMQGLNGPVGDTGPPGPKGGIGMPGVPGNPG
TEGKPGPPGSMGPQGSMGAPGVQGPLGKPGIPGIPGTDGPPGHPGTDGPPGQKGDMGQPG
PLGLSGYRGRRGVKGANGVRGLPGHKGNFGEPGIPGFKGELGEKGVRGPVGAPGVTGNEG
SAGPKGEIGMVGDPGPMGPLGDKGQQGPPGLPGYPGRVGDKGDIGPKGRVGVRGLKGSRG
LDGAPGKEGPRGPRGGTGQRGVIGNTGGIGPKGEEGPQGPPGLAGERGAQGDIGPRGFGG
PKGPPGQNGQNGIPGFPGARGEPGFEGASGPPGPGGVVGPTGAPGEKGPAGSRGFPGAQG
RPGEAGLPGADGTSGPPGQDGQPGLTGPAGPPGEQGFPGERGLPGPTGPDGDKGDDGAVG
ATGQPGPPGDRGGSGDPGAPGLVGRVGERGPIGPPGGKGDPGEEGPPGPTGRDGQPGPPG
VSGPIGPPGPTGEDGERGDQGFPGQKGQKGLRGEEGPVGNSGDRGPSGEPGQPGEDGDPG
VPGDIGVRGIKGEEGPIGIPGPSGPIGLQGLPGPTGTKGDVGDPGQTGLPGPTGRPGQQG
PPGGSGGEGAPGPRGDDGPSGQKGEKGDSGIPGGIGRTGPPGQKGDTGVKGEPGNPGLPG
PEGPRGPEGPEGPKGHQGPFGFPGEPGEGGAPGVPGQLGEAGLPGEDGDPGPPGPQGPPG
DIGRPGPRGKSGVPGLDGMPGDGGPKGDPGDLGSQGLRGDPGPPGLPGPAGQQGPSGPRG
FPGPEGDAGDQGRAGLTGPMGPQGPLGPPGQKGDDGPRGPKGDPGLVGPNGPVGSVGEKG
DKGDYGESGPRGPKGDSGPEGPRGPMGPEGPPGIPGREGPAGQKGSRGDSGLKGDRGPSG
APGPPGPAASTEYLQALLDRGILSVGGRGQYSPSGPAPANVDPGPGLGVSESSFSNVNSD
PSFNGGVRKRRQAVVIDGNEINDPPGFDPASDLPDIFEDLPEAYIQALEQLFGSLEDLKT
EVHQIKRPVGSKENPARTCKDLWLCHEDYEDGYYWIDPNQGCTIDAVEVYCNFTAGGETC
VQPDDESGELPMDFYDDETWNELRGFRNDNPGEYFSEFAQGQPITYSNVGVVQMTFLRLL
SSRATQNFTYLCSRSAGWYSEEDDSFQYALRLLGANEEEFTHGGTFEPLVLKDECKDKRA
KGETVLEITTTKLHQLPIIDFAASDFGEKKQKFGFRAGPVCFN
NT seq
4812 nt
NT seq
+upstream
nt +downstream
nt
atgtctacggatggaatgttaatatttggagatcaaccaatagtaaccggtagaacgata
caaggttttacgggagtaatacaacagctacttataatcccagacccaaatgctgcagac
agactatgtcaagattatgttcccgattgtgacgaaccagaaactcatttggtagaaaga
atactacgtccatcaaatgcagacatagaaagagcaccttcaggtcttcaagttgacctt
gggtccggctcagtaagttacgactattcatcagattacgtgtctatttccaaccctaat
actggtggtgctggtaacccatctccaggtggcgctggtaatccatctccaggtggcaat
cccggtggcaatcccggtggtaatcccggtggcaatactggtggcaatactggtggagga
ccaccagaccagctctcaaaaggtcaaaaaggacaaaagggggaacctggtcgcgtgagt
tacgattcttcacctggaccaaacggaagaccgggaccacctgggccacaaggtccccca
ggttcacaaggacgccccggaccaccaggttcaaaaggagaaaagggtagcgatggacga
gacggtttaaatggatcaccaggtctacgtggacctgcaggtgccaatgtataccttcca
caacaaatcgttaacatggttgcagatggtacgggagctaaaggaccgggtgcagcccgc
aacttggaagctctaagacaagtattggaagagcagaggcttgcaatgacaggtccgaga
ggaccctcaggtctttcaggacgaagtggacctttgggtccaccaggtcccgatggaccg
aaaggagatcctggcggtatgggcgatcttggacaacgaggtttgcctggcaatccaggt
ccagcaggtagatccggcaaacgtggacgaccaggaactgatggacctctcggtatccga
ggaccaatgggacttaagggagctcgtggatttgatggtttaccaggccttcccggtata
aaaggttcacttggcagacctggacaacgaggtgtgataggaccaggtggtgaacgtggt
aggaatggtgatgatggcgaaagaggagactcaggtccagtgggtcctccaggtccgagt
ggaagcacaggtccccgtggaatgcctggaatgcaaggtctaaatggtccagttggtgat
accggtcctccgggtccaaaaggtgggataggtatgcctggtgttccaggtaatccagga
actgaaggaaaaccagggccaccgggctctatgggaccacaaggatctatgggagctcct
ggagttcaaggaccgttgggaaaaccaggtattccaggtataccaggaacagatggaccc
ccaggtcatcctggaactgatgggccaccaggtcagaagggtgatatgggtcaaccaggt
ccacttggtctgtcgggttatcgaggtcgacgtggtgtaaaaggtgcaaatggtgtacgt
ggtttaccaggacataaaggcaacttcggagaaccgggtattcctggattcaaaggtgaa
ctgggagaaaaaggtgtgaggggacctgttggtgctccaggtgtcacaggcaatgaaggt
tctgcaggaccaaagggtgaaattggcatggtaggagatcctggtccaatgggtccactg
ggtgacaaaggacagcaaggtccgcctggattacctggatacccaggcagagtgggagat
aagggtgatattggtccaaaaggaagagtgggtgtacggggtcttaaaggctctcgagga
cttgatggtgcaccgggtaaagaagggccaagaggaccaaggggaggtacaggacaacgc
ggtgtcatcggaaacactggaggcatcggaccaaagggagaagaaggcccacaaggacct
ccaggactagcaggagaaaggggagcacaaggagacatcggtccaagaggtttcggggga
ccaaagggtccaccaggacaaaatggtcaaaatggtataccaggcttcccaggagcgaga
ggcgaacccggattcgaaggagcttctggcccacctggacctggtggtgttgttggacct
acaggtgcacctggagagaaaggaccagccggcagtcgtggtttcccgggagcgcagggc
cgcccaggagaggctggtctgcctggagctgacggtacatctggaccccctggacaagat
ggacagccaggattaacaggacccgcaggaccccctggtgaacaaggatttcccggcgaa
agaggtctacccggaccaacgggccctgatggtgataagggtgatgatggtgctgttggt
gcaacaggacagccgggtccacctggagatagaggtggttcaggagatccaggcgctcca
ggattagtgggacgagttggtgaacgtggtccaattggccctccaggaggaaagggtgac
ccgggtgaagaaggcccaccaggaccaactggtcgagatggacagcctggaccacctggt
gtgtcgggtcctattgggcctccaggacctactggtgaagatggtgaaagaggtgatcaa
ggtttccctggacaaaaaggacagaaaggtcttagaggagaagagggtccagttggtaac
tctggagatcgtggtccatcgggtgaacctggtcaaccgggagaagacggtgatccaggc
gtaccaggtgacattggtgttcgtggaataaagggtgaagaaggtcccataggaattcca
ggaccatcgggtccaattggtttacagggattgccaggaccaacaggtacaaaaggtgac
gtcggtgatccaggtcaaactggattgccaggaccaactggtagaccaggccaacaagga
ccaccaggaggatcgggaggagaaggagcacctggaccacgtggtgatgacggaccatca
ggacaaaagggagaaaaaggagattcaggaatccctggaggcattggaagaaccggacca
ccaggacaaaagggagataccggtgtaaaaggagaaccaggaaatcctggtcttccaggc
cctgaaggaccacgtggaccagagggacctgagggtccaaaaggacatcaaggtccattt
ggcttcccaggagagccaggtgaaggtggtgcccctggtgttcccgggcaactcggagaa
gcaggtttgccaggagaagatggagatcctggaccaccgggtccacaaggaccacctgga
gacattggaagacctggtcctcggggtaaatcgggtgttcctggtttggacggcatgcct
ggtgatggtggaccaaagggtgaccctggtgacctcggatcacaaggacttcgaggcgac
cccggcccacctggactacctggcccagctggacaacaaggacctagcggtccacgcgga
ttccccggacctgagggagatgctggtgaccaaggccgagcaggactaacaggacctatg
ggaccacagggaccacttggaccaccaggacaaaaaggagatgatggaccacgaggcccc
aagggtgatccaggtcttgtgggaccaaatggaccagtaggatcagtaggagaaaaggga
gacaaaggagattatggagagtctggcccacgtggtccaaaaggcgattcgggaccagaa
ggaccaagaggaccaatgggaccagagggaccacctggaattcctggtcgtgaaggtcca
gctggccaaaaaggtagccgtggtgattcaggtctgaagggtgatagaggaccatcggga
gctccaggaccaccgggaccagctgcaagcacagagtatttgcaagcattactggataga
ggtatcttgagtgttggtggtcgtggacagtattctccgtccggaccagcaccagcaaac
gtagatcccggacctggacttggtgttagtgaaagcagctttagtaatgtaaatagtgat
cctagttttaatggaggtgtcaggaaaagacgtcaagcggttgttattgacggcaatgaa
atcaacgatccccctggttttgatcctgcctccgatctccctgatatcttcgaagatctt
ccagaagcatatatccaagccttagaacagttatttgggtctcttgaggacctcaagaca
gaggtacatcagattaaacgccctgtgggctcaaaggagaacccagcaagaacgtgtaaa
gatctatggctatgtcatgaagattacgaagatggttattactggatcgatcccaaccag
ggttgtacaatagatgcagttgaggtatattgtaattttacagctggtggtgagacttgt
gtacagccagatgatgaaagtggtgagctgccaatggacttctatgacgatgagacttgg
aacgagttacgaggtttccgaaatgacaatcctggagaatatttcagcgaatttgctcaa
ggacagccgatcacctatagcaacgtgggtgttgtacaaatgacattcttaagattgcta
agcagtagagcaacacaaaatttcacgtacctttgcagtcgaagcgctggatggtatagt
gaagaagacgatagctttcagtacgcgctcaggcttctaggtgcaaatgaagaagaattc
acccatggtggtactttcgagccgttggttctcaaagatgagtgcaaggacaaacgtgct
aaaggcgaaactgttttagaaataacaacaaccaagctccaccagcttcctatcatcgac
tttgcagcctcagattttggcgagaaaaaacagaagtttggctttagggctggtccggtc
tgtttcaactga
DBGET
integrated database retrieval system
