Amphiura filiformis: 140166749
Help
Entry
140166749 CDS
T10871
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
afil Amphiura filiformis
Pathway
afil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140166749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
afil03000
]
140166749
03019 Messenger RNA biogenesis [BR:
afil03019
]
140166749
04121 Ubiquitin system [BR:
afil04121
]
140166749
Enzymes [BR:
afil01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
140166749
Transcription factors [BR:
afil03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
140166749
Messenger RNA biogenesis [BR:
afil03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140166749
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140166749
Ubiquitin system [BR:
afil04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
140166749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-UDP
zf-RING_2
Nup35_RRM_2
DLIC
Motif
Other DBs
NCBI-GeneID:
140166749
NCBI-ProteinID:
XP_072046345
LinkDB
All DBs
Position
12:30684573..30718324
Genome browser
AA seq
786 aa
AA seq
DB search
MMHNEDPVECPLCMEPLEMDDINFYPCTCGYQICRFCWHRIRTDENGLCPACRKAYQECP
ADFKPLSEEELQRIKNEKKQKDQQRKQKISENRKHLASVRVVQKNLVFVVGLSQRLADQE
VLKKQEYFGKFGKIIKVVINQNTSYAGSQGPSASAYVTYQRAEDALRAIQAVNNVHVDGR
TLKASLGTTKYCSHFLKNAACPKPDCMYLHELGDEAASFTKEDMQMGKHQEYEQKLLSDL
FGGGTSSATATTSNPQQSATAITTAATNTSNSSNSTQNSQQSSVFTQQQTELNRSSPTDI
TTARKKSPSPPITTNHNNIEAWPSLQREGDTGPNTPDEKSQSPTVETANNTAPPVGNHMG
DRTFAGIRYRCSRLPSSSSNHPTSRSPFESHENSSFFSANGFLPQILGLGLGGPPPLIPP
GPPPNLPPPPQPHPANDLLSLCLDWSEGLVLSNDLPPVNSQTDWQAAFGFGSELKDKQNA
EDDLGFDPWNESSKGLADLLEKELQLGTSPAASSQVTQPPPGFNPSPFNHTLGFGIRPPP
QSVPADASGSKMFQWMQNKPPRLPTGHPAHMSSLPPPFQPGMGIPPPPGQHPPFPGAAPP
LGYPNHTPRVPPPLGTGSLSSNPQSESVNIESWQEGLRALLPNINISFGVPFTQQQIATQ
HSADTWSGNQSSWNKHNDPAIISINSNSLNTGSTTTGGTAPTSNSYGIGGGLLDKDGEEQ
PPHWLESLQTLTEPEESPTHSNHLFPSHQHNNRGPSWTTHAPPPGLHPQIRPNSQTTEPH
TLTENL
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgatgcacaacgaagatccagttgaatgccctctctgcatggagcccttggaaatggac
gacatcaatttctacccatgcacatgtggctatcaaatctgtcgattctgttggcatcgt
atcagaacagatgagaacggcttgtgtccagcctgtcgcaaagcctaccaggaatgcccg
gcagacttcaaaccactctcagaggaagagttgcagcggataaagaatgagaagaaacaa
aaggaccagcagaggaaacagaaaatttcagaaaatcgcaaacatcttgcaagcgtacgg
gtagttcaaaagaatttggtgtttgtagtaggtctgtcacaaagactagcagaccaagag
gtgttgaagaaacaggaatattttggtaaatttggtaaaattatcaaggtggtcatcaat
caaaacacatcctatgcaggctcacagggccctagcgccagtgcctatgtgacatatcag
agggcagaggatgccctgagggcgattcaagcagtcaacaatgtccacgtagatggtaga
actctaaaagcctccctaggaacaactaaatattgtagtcacttcttaaaaaatgcagcc
tgtccaaaaccggactgtatgtatttgcatgaattaggtgatgaagcagcaagctttaca
aaagaagacatgcaaatgggtaagcaccaggaatatgaacaaaagttactttcggattta
tttggtgggggtaccagttcagcaacagcaacaacaagtaatccacagcagtcagcgaca
gcaataacgacagcagcaacaaacacatcaaatagcagtaatagtacacagaacagccaa
cagtcttcagtgtttacacaacaacaaacagagcttaatagatcatcaccaacagatata
acaacagcaagaaaaaaatctccatcgccacccatcacaacaaatcacaacaacatagag
gcctggccttcactccaaagagaaggcgacacaggcccaaatacgccagatgaaaaatcc
caatcaccaacagtagaaacagccaacaacacagcgccccctgtgggcaatcacatgggt
gacagaacttttgccggtattcggtaccgttgcagccgtttacctagcagtagtagcaat
catccaactagtaggtctccgtttgaaagtcacgagaattcatcgttcttttcagccaac
gggttcctacctcagatccttggtctaggtctagggggtccgcccccattgattccacct
ggtccacccccgaatctaccaccaccgccccagccacatcctgcaaatgacctgttatct
ttgtgtctagattggagcgaaggtctagtgttaagtaatgacctaccgccagtaaatagc
caaacagactggcaggctgcattcgggtttggatccgagctgaaagacaagcaaaatgcc
gaggatgatctaggttttgatccatggaatgaatcaagtaaaggccttgctgatttgttg
gaaaaggaacttcaattaggtacatcgccagcagccagtagtcaagtaacccagccgcca
ccgggcttcaatccatcaccgtttaatcacacgcttggttttggcataaggccaccgcca
cagtcagtaccggcagatgcaagtggcagcaaaatgttccagtggatgcaaaacaaacct
cccaggttgcctacaggtcatcccgctcacatgtcttcactaccaccgcccttccagcct
ggtatgggtataccacccccaccgggtcaacacccgcccttcccaggtgcagcgccacca
ctaggttatcccaatcacacaccgagggtgccaccaccgttaggtacaggcagtctctca
tctaatccacagtctgagtccgtaaacattgagtcatggcaagagggtctgagggcgctc
ttacctaatattaatatcagctttggtgttcctttcacacaacaacagatagccacacaa
cattcagccgacacatggtcaggtaatcagtcatcgtggaataaacataacgatcctgcc
atcatcagtatcaacagcaactcactcaataccggtagcacaacgacagggggcacagcg
cccacatctaattcttacggcattggagggggtctgttagacaaagacggcgaggagcag
ccgcctcactggttagagtcgttacagacgctgacagaacccgaggagtcgcctacacac
agtaatcatctcttcccgtcacatcaacacaacaacagaggtcctagttggacaacacat
gcacctccaccagggttgcatccacagattaggcctaacagccaaaccacagaaccacac
acacttacagaaaatctctaa
DBGET
integrated database retrieval system
