KEGG   Amphiura filiformis: 140168544
Entry
140168544         CDS       T10871                                 
Name
(RefSeq) replication factor C subunit 5-like
  KO
K10756  replication factor C subunit 3/5
Organism
afil  Amphiura filiformis
Pathway
afil03030  DNA replication
afil03410  Base excision repair
afil03420  Nucleotide excision repair
afil03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:afil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    140168544
   03410 Base excision repair
    140168544
   03420 Nucleotide excision repair
    140168544
   03430 Mismatch repair
    140168544
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:afil03032]
    140168544
   03036 Chromosome and associated proteins [BR:afil03036]
    140168544
   03400 DNA repair and recombination proteins [BR:afil03400]
    140168544
DNA replication proteins [BR:afil03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    140168544
  DNA Replication Termination Factors
   ELG1-RFC complex
    140168544
Chromosome and associated proteins [BR:afil03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    140168544
DNA repair and recombination proteins [BR:afil03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     140168544
  Check point factors
   HRAD17(Rad24)-RFC complex
    140168544
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_11 AAA_22 AAA_assoc_2 AAA_14 RuvB_N AAA_24 AAA_16 ResIII DUF815 DEAD AAA_7 PhoH AAA_5 Mg_chelatase AAA_30 AAA_19 TIP49 DNAX_ATPase_lid Gp44_lid Thioredoxin_6 ATPase_2 BrkDBD
Other DBs
NCBI-GeneID: 140168544
NCBI-ProteinID: XP_072048048
LinkDB
Position
13:complement(55373707..55407969)
AA seq 334 aa
MSSSEGGTGTKNLPWVEKYRPNQLDDLISHREIISTIQKFMEEDRLPHLLFYGPPGTGKT
STILACAKQLYSPKEFNSMVLELNASDDRGIGIVRGPVLNFASTRTIFNRGFKLVILDEA
DAMTNDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFAPLDMTQMMPRIQ
HVIDEEKVKVTEDGMTALVTLAKGDMRRSLNILQSTSMAYDTVNEENVYLCTGHPLRSDI
ESIVDWMLNKDFTTAYNNIMQLKTLKGLALQDILTEVHTYVHRIEFPLNVRIHLLDKMSE
IEHRLAAGTSEKIQLSSLVSGFQIARDMVVAAAD
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgtcttcgagcgagggaggaacaggaaccaaaaatttaccatgggttgagaagtaccga
cccaaccagctagatgacctcatatcccatcgggaaatcatctctacaattcagaagttt
atggaagaagacaggctgcctcatttattattctatggtccgccaggaacaggcaaaact
tccaccattctagcatgtgcaaaacagctttactcgcccaaagagttcaactctatggtc
ttagagctcaacgcatcagacgacagaggtataggcatagtacgtggaccagtccttaac
tttgccagcaccaggacgatattcaacagagggttcaagttggtcatcttagatgaggca
gatgcaatgacgaatgatgcccagaatgcactcagaagagttatcgagaagttcacagaa
aacaccaggttctgcttaatctgtaattacctgtctaagattattccagcattgcaatca
agatgtaccaggtttaggtttgcaccccttgatatgacacagatgatgcccaggatacag
catgtcatagatgaggaaaaggtgaaagtgactgaagatggcatgactgcattggtaaca
ctagcaaaaggtgatatgagacggtccttaaatatattacagagtacatcaatggcatat
gacacagtgaatgaagagaatgtctacttatgtacaggccatcctctcagatctgatata
gaaagtatagtcgactggatgctgaataaggacttcaccacagcctataacaatatcatg
caattgaaaacactcaagggtcttgcactacaggacatcttgacagaagttcatacctat
gttcacagaattgaatttccacttaatgttaggatacacctgctggacaagatgtctgaa
attgaacacagactggctgcgggaacaagcgagaagatccagctttcctcattagtttcg
ggattccaaattgccagggacatggtcgtagcagcagctgactga

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