Acidithiobacillus ferridurans: AFERRID_03130
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Entry
AFERRID_03130 CDS
T05847
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
afj
Acidithiobacillus ferridurans
Pathway
afj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AFERRID_03130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afj03019
]
AFERRID_03130
03400 DNA repair and recombination proteins [BR:
afj03400
]
AFERRID_03130
Enzymes [BR:
afj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AFERRID_03130
Messenger RNA biogenesis [BR:
afj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AFERRID_03130
DNA repair and recombination proteins [BR:
afj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AFERRID_03130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
HRDC
Helicase_C
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
BBF64095
UniProt:
A0A2Z6IJA4
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All DBs
Position
321859..323670
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AA seq
603 aa
AA seq
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MPILPTQQPVEILRHTFGYDAFRVPQEEVIQTLMAARDALVLLPTGGGKSLCYQIPAIAM
AGTGVVISPLIALMEDQVTALRQAGVAAAALNSTASPAETRATEEALLRGSLDLLYIAPE
RLLQERTLNLLQRATVNLFAIDEAHCVSQWGHDFRPEYLQLRVLHERFPQVPRIALTATA
DSKTRAEITERLALQEAAAFIGSFDRPNIRYHINSGGQGARNALLRFIRDRHTGDAGIVY
CLSRKRVEEVAEWLQGEGLDALPYHAGLGFDERRRNQQRFQRDEGVIVVATIAFGMGIDK
PNVRFVAHLNLPKSVEAYYQETGRAGRDGLPAEAWMHYGLQDVVQLRQMIQQSEADLPRK
QMEGHKLDAMLALCETTDCRRQTLLGYFGESLSSPCGNCDNCLQTPATWDATVAAQKALS
AIHRTGQRFGVQYLVDVLLAREDPRIRQQGHDRLSVYGIGKELSANAWRALFRHLLLRGL
VEVDHDGHGGMRLSPSSRPLLRGEEKLTLRQHESSVPKQREQRPEIAPRDTALWEALRQH
RRELAQAQGVPPYIIFHDATLMEMLHRRPRDLEALAALPGIGERKLAAYGTSFLKILHRD
RPS
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgccgatcctccctacccagcagccagtggaaatcctccgccacaccttcggttatgac
gccttccgggtgccgcaggaagaggtaatccagaccctcatggcggcccgggatgcgctg
gtgctcctgcctacggggggtggaaaatccctgtgctatcagattcccgccatcgccatg
gcagggacgggcgtagtcatttcgccactgatcgcgctcatggaagatcaagtcaccgcc
ttgcgtcaggcgggtgtcgctgctgccgccctgaactccactgccagccccgcagaaaca
cgcgccaccgaggaagcgttgctacggggcagcctcgatctgctctacatcgctccggaa
cgcttgctgcaggaacgcaccctcaacctgctgcaaagggccacggtcaacctcttcgct
attgacgaagcccattgcgtgtcccagtggggtcacgactttcgcccggaatacctgcag
ttacgagtgctgcatgagcgcttcccccaggtgccgcgcatcgccctcactgccaccgcc
gactcaaaaacccgcgcggaaatcaccgaacggctggcgctacaagaagcggccgccttt
atcggctcctttgaccgacccaacatccgttaccatatcaacagcggtggtcagggtgcg
cgcaacgccttgttgcgattcatccgcgaccgccacaccggagatgccggcatcgtatat
tgcctgtcccgcaagcgcgtggaggaagttgccgagtggctgcagggcgaagggctggac
gccctgccctatcatgccggtttggggttcgacgagcggcgtcgtaaccagcaacgattt
caacgggatgagggtgtgatcgttgtcgccaccatcgccttcggtatgggcattgacaaa
cccaatgtccgctttgtagcgcacctgaatctgcccaagagtgtcgaggcctactatcag
gaaaccgggcgtgccgggcgcgacggtctgcctgcagaagcctggatgcattacggtctt
caggatgtcgtgcagttacggcagatgatccagcaatccgaagccgacctgccgcgcaaa
cagatggaaggacataagctggacgctatgctcgcgctttgcgaaaccacggactgccgc
cgtcagaccctgctcggctactttggcgaaagcctctcctccccctgcggcaattgcgac
aattgcctgcagacgccggccacctgggatgccacggtggccgcacagaaagccctgtct
gccattcatcgtaccggtcagcgcttcggggtgcagtatctggtagacgtgttgctggct
cgggaagatccacgcattcggcaacagggccatgatcggctcagcgtatacggtattggc
aaagaactgtccgccaacgcgtggcgcgccctgtttcgccacctcttgctgcgcggactt
gtggaagtggatcacgacggtcacggcggcatgcgcctcagcccatccagtcgcccgctc
ctgcgcggcgaagaaaagctgaccctgcgccagcacgaaagctcggtcccgaagcaacgc
gaacaacgcccggagatcgcaccccgcgacaccgcgctctgggaagccctgcgccagcac
cgccgtgaactggcgcaagcccagggcgtgccgccctacatcatttttcacgacgccacc
ctcatggaaatgctccatcgacgcccgcgtgacctggaagcactggcggcgctccccggc
atcggcgagcgcaaactggcggcttacggcacatcttttctgaagatactgcatcgcgat
cgaccttcctaa
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