Acidithiobacillus ferridurans: AFERRID_04060
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Entry
AFERRID_04060 CDS
T05847
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
afj
Acidithiobacillus ferridurans
Pathway
afj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
afj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AFERRID_04060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afj03021
]
AFERRID_04060
Transcription machinery [BR:
afj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AFERRID_04060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
RdRP_3
SPO22
BNIP2
Dsc3_C
CdvA
Snapin_Pallidin
Motif
Other DBs
NCBI-ProteinID:
BBF64188
UniProt:
A0A2Z6IEY0
LinkDB
All DBs
Position
complement(413938..415833)
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AA seq
631 aa
AA seq
DB search
MRDGESVVDNESQRSELKRLIARGKEQGYLTYREINDHLPEEVFDPEQMENVISMINDMG
IEVFEEAPDDDTLLMDGEGGTVVAAQEAEEAAEEALAVVEADIGRTSDPVRMYMREMGSV
ELLTREGEIEIARRIEDGLMQVLRAVSTCPTTISLLLDAADRVERGETRLDEVVDAFIDL
SALDAETVSEAEESVLVEGDDLDVDEDEEESEDDDIEVVDKGPQLEDALERFAVIRAAYT
ALQASHAEGEMHGESYQQQRRELAERFLEIKLNGRQIDVMTDALRGLTEEVRQCERELME
LCIERARFPRKDFVRSYPGHEGDIGWIDQQIAAGHAYSNRLVEFRDDIVAIMKRLANIEK
RAGLPIAEIKEASRLMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ
MLQEMGREPSPEELAERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDRNVT
APADSAVNAAIREVVEELLDNGLTAREAKVLRMRFGIGMNTDHTLEEVGKQFDVTRERIR
QIEAKALRKLRHPSRSERLRSFVDGEVTIPS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgagagacggtgagagtgtagtggataatgaatctcagcggtctgagctgaagcggctt
attgcgcgtggtaaagagcaaggctacctgacctatcgcgagatcaatgatcatttgccg
gaagaggttttcgaccccgagcagatggaaaatgtcatctccatgatcaatgacatgggt
attgaagtctttgaggaggctccggacgacgataccctgctgatggatggggaaggtggt
accgtagtcgccgctcaggaagcggaagaagcggcagaagaagccctggctgtggtcgag
gcggatattgggcgaaccagtgatccggtgcgtatgtacatgcgtgagatgggcagcgtg
gaactgctcacgcgtgaaggcgaaatcgaaattgcccggcgtatcgaagatggcctgatg
caggtgttgcgcgcggtatcgacctgtccgacgaccatctctcttcttctggacgccgcg
gatcgggtggagcgcggcgagacgcgcctggatgaggtggtcgacgcctttattgatctt
agcgcgctggacgcagaaaccgtcagtgaggcggaagaaagcgtgctggtggaaggcgac
gatctggacgtcgatgaggatgaggaagaatccgaagacgatgatatcgaagtcgtagac
aagggaccacagctcgaagatgcattggaacgttttgcggtcatccgtgctgcgtatacc
gcgctgcaggccagccatgccgagggtgagatgcatggtgaaagctatcagcagcagcgc
cgggaactcgccgagcgtttcctggaaatcaaactcaacggtcgtcagattgacgtcatg
accgacgccctgcgcgggctcacggaagaggtgcgtcagtgcgaacgagagttgatggaa
ctgtgcattgaacgtgcgcgcttcccgcgtaaagactttgtacgtagttatcctggtcat
gagggtgatatcggctggattgatcagcaaatcgcggctggtcatgcctatagtaaccgt
ttagtggagtttcgtgatgatatcgtggcgatcatgaaacgcttggcgaatattgagaag
cgtgccggtttgccgattgccgagatcaaagaggccagccgcctgatgtccattggtgag
gccaaggcgcggcgtgccaagaaggaaatggtggaggccaacctgcgtttggtaatctct
atcgccaagaagtataccaatcgtggcctgcagttcctggatctgattcaggaaggaaat
atcggcctgatgaaggcggtggacaagttcgaataccgacgtggctacaaattctcgact
tatgcgacttggtggatacgccaggccattacgcggagtattgcggatcaggcgcggact
attcgtattccggtacatatgattgaaaccataaataaactcaatcgaatcagtcgccag
atgctccaggaaatgggacgtgaaccgtcgcctgaagagttggcggaacggatggaaatg
cctgaggataaaatccgcaaggtgctgaaaattgccaaggagcctatctccatggagacg
cccatcggtgacgatgaagattcgcacttgggcgacttcatcgaagatcggaatgtgacg
gcgccagcggattcggccgttaacgccgccattcgcgaagtggtcgaggagttgcttgat
aatggcctgacagcgcgggaagccaaggtattgcgtatgcgttttggcatcgggatgaat
accgaccacacgctggaggaggtcggcaagcagtttgacgttactcgtgagcgtatccgc
cagattgaagccaaggcgctgcgcaaactgcgccatccctctcgatcggagcgtttgcgc
agttttgtggacggtgaagtgacgattccatcgtga
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